| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dd1591_1893 |
|---|
| Symbol | |
|---|
| ID | 8119370 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dickeya zeae Ech1591 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012912 |
|---|
| Strand | + |
|---|
| Start bp | 2162256 |
|---|
| End bp | 2162810 |
|---|
| Gene Length | 555 bp |
|---|
| Protein Length | 184 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 53% |
|---|
| IMG OID | 644852284 |
|---|
| Product | RNA polymerase, sigma-24 subunit, ECF subfamily |
|---|
| Protein accession | YP_003004222 |
|---|
| Protein GI | 251789501 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog |
|---|
| TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.327948 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGAAACGA TTGCACTGAA ACAAATGGAT GCGTGTCAGA TTCATACCCC TGCCAATACC
GTGGATTGGG AGCAGGTTTT TCGCCTGCAT GGCAAACGAC TGCAAAACTT CATTCGCAAG
CGCGTATCGA ACCGTGAGGA TGTGGAAGAT TTACAGCAGA TGACCTACCT GGAAGTGTTG
AAAAATCGCG AAAAGTTCGC CGGCGCTTCG CGTCCGGAGA CCTGGGTATT CGGCATCGCC
CTGAATCTGG TACGAAATCA CTTCAAGCAG GCGCGTTATC GTGCCTTCGA TATTAGCGAC
GAGGCGTTGG AAGTCGCGGA AATTCTGTCG ACGGATATCG ATCCCAGCCG TATCACGGAA
TGCGATCACT CATTGAGCCG CGCACTGGCG GCCAGTGCGC ACCTGCCTGA GGAAACGCGT
AAAATGTTGA TGATGTTGCT GGATGCCGAT GTCAGCTACC AGGACATTGC CGAGCAACTC
AACATTCCTA TTGGCACTGT ACGTTCGCGT CTTTCCCGCG CCAGGGGATA TCTCCGCCAG
GCCGTTGATG CATAA
|
|---|
| Protein sequence | METIALKQMD ACQIHTPANT VDWEQVFRLH GKRLQNFIRK RVSNREDVED LQQMTYLEVL
KNREKFAGAS RPETWVFGIA LNLVRNHFKQ ARYRAFDISD EALEVAEILS TDIDPSRITE
CDHSLSRALA ASAHLPEETR KMLMMLLDAD VSYQDIAEQL NIPIGTVRSR LSRARGYLRQ
AVDA
|
|---|
| |