Gene Dd1591_1805 details

Gene Information

• Locus tag: Dd1591_1805
• ID: 8117288
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Dickeya zeae Ech1591
• Kingdom: Bacteria
• Replicon accession: NC_012912
• Strand: -
• Start bp: 2069176
• End bp: 2070990
• Gene Length: 1815 bp
• Protein Length: 604 aa
• Translation table: 11
• GC content: 54%
• IMG OID: 644852197
• Product: diguanylate cyclase with PAS/PAC and GAF sensors
• Protein accession: YP_003004135
• Protein GI: 251789414
• COG category: [T] Signal transduction mechanisms
• COG ID: [COG2199] FOG: GGDEF domain
• TIGRFAM ID: [TIGR00229] PAS domain S-box; [TIGR00254] diguanylate cyclase (GGDEF) domain

Plasmid Coverage information

• Num covering plasmid clones: 2
• Plasmid unclonability p-value: 0.00702406
• Plasmid hitchhiking: Yes
• Plasmid clonability: hitchhiker

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGACGTCCC CATGTCATCG TTGTAGCGAA GAGCAACAAG ATATCTTCTC GCGTATGCTG 
AATATTTTCG ACACTCAGCC TGCCGAAGAG CTCCCGCGCC TGGCGCGCAT CACCCGTACT 
TTTTTTCAGG TGCAAAGCGT GGTGATCTCC CTGGTCAACA GCGAGCGTCA ATGGTTTTTG 
TCAAAAGACA ATTTTCCCCG TCAGGAGCCG TCCATCGAGT TTTCCTTTTG CGCCCATACG 
GTAAGCGCCA ACGCACCGCT AATCGTTACG GATACGCTGC TGGATGCCCG CTTCGCCGCC 
AATCCGCTGG TCACCAGCGA CGACCCCATT CGTTTCCACG CCAGTTATCC ATTGTGCTCT 
TCGCGGGGTA CGCCGATTGG CGCGCTGTGT CTTTACCATA ACCATCCGCG CACATTCAGC 
GACGATGAGC TACAGCAGTT GAGCGATTTG GCGTGTATCG TGCAAACCGT GCTGCATAAA 
GTGGAAATGC AGGCACGTGA AGCGATAGCG CAAGAACGGT TGCATCAATC GGATTACATC 
AGTCAGCAAA TCTTTTTTCG CGCCGCCATC GGCCTGGCAC TGATCGCACC GGACAAACGG 
CCACTAAAAT TCAATCACGC ACTGTGCGAC ATGCTCGGTT ACGACGAGGA AACCTTGCTG 
GCTCTCCCTG TGGAAAACGT CGTGCACCCG GACGATTTGC CGGGCTTAAT CAGCGCCCAT 
GCACAACTGA TGGAGAGCGA CATGCGGGAA TGCACACAAC AACGGCGCTA TATTCGCTCA 
GACGGTAGCG AACTGTGGGC CCAGGTCTCT ATCTCCGTGC TCTACAACCC GGACGGCAGC 
AAGTTCGGCC TGCTGCTGGC GCTGACCGAC CTGAGCGACC AGAAAGCCTC TGAGCGGGCA 
TTACGCAGCC TGAGCCAGCA GTTGGAAAGC CGGGTGGAAC AACGCACCGC TGAATTGCGC 
CAGAGTCATC AATTTATTCA GGATATTACC GATCATATTC CGGCCATAAT TTCCTGCATC 
AGCCCGGATA ACGTGTTGGT CTTCGCCAAT CGCCACCTGC GCAAACTCAT CGGCCATGAA 
CATGACTCCC TCTACCAACG CGATATTCAC GATATCCTTC GCCCACAGGA GGTGGAGTTG 
TTTTTGCCGC GGCTGGAAGA GTCACGCCAG AAACAGCAAC CGACGTCCTT TGAGCACGTG 
ATGGATATGC CCGACGGCCA GATAGTGACC TTTCATACCG AAATGGTGCC GGCTGAACCG 
CCGGAACTCG GCACCTATAT ACTCTCTACC GATATTACCC ACCTCACGGT CTTGCGCGAC 
CAATTGGCAT TCGAAGCCAA CCATGACCAT CTCACCGGCC TGCCCAACCG GCGAGCGGTC 
ATCAGCTATT TGAACCGTCT GGCGGGTAAA AAGCGACGCG GCGCGCTGGC ATTGTTATTT 
TTCGATATCA ATAATTTCAA ATACTACAAC GACCAGTTCG GCCATGATTT TGGCGATCGG 
GTTATCAAAA CGTTTGCACG CCTGCTGCGC CAGAATACCC GATCTTATGA TTTCATCGGG 
CGTCTGGCGG GCGATGAGTT TCTGATGGTC ATCCATGAGC AGAATAATCT GAACAGCGAA 
ATTCGCGCGA TTACTCAAAA GCTGAAGGCG AAGATCGAAA AGCCGGTCAC TATTCGCCGC 
CAGACGATTA CGTTATCCGC CAGCGTGGGC CGCGCGATCC TGCCGCAAGG CGCTCCACTT 
AACGCCAATG AATTGATCCG TCAGGCAGAT ACCGCCATGT ATCAGGCCAA ACGCCGGTCT 
ATTTCATCGC CCTGA 

 

Protein sequence

MTSPCHRCSE EQQDIFSRML NIFDTQPAEE LPRLARITRT FFQVQSVVIS LVNSERQWFL 
SKDNFPRQEP SIEFSFCAHT VSANAPLIVT DTLLDARFAA NPLVTSDDPI RFHASYPLCS 
SRGTPIGALC LYHNHPRTFS DDELQQLSDL ACIVQTVLHK VEMQAREAIA QERLHQSDYI 
SQQIFFRAAI GLALIAPDKR PLKFNHALCD MLGYDEETLL ALPVENVVHP DDLPGLISAH 
AQLMESDMRE CTQQRRYIRS DGSELWAQVS ISVLYNPDGS KFGLLLALTD LSDQKASERA 
LRSLSQQLES RVEQRTAELR QSHQFIQDIT DHIPAIISCI SPDNVLVFAN RHLRKLIGHE 
HDSLYQRDIH DILRPQEVEL FLPRLEESRQ KQQPTSFEHV MDMPDGQIVT FHTEMVPAEP 
PELGTYILST DITHLTVLRD QLAFEANHDH LTGLPNRRAV ISYLNRLAGK KRRGALALLF 
FDINNFKYYN DQFGHDFGDR VIKTFARLLR QNTRSYDFIG RLAGDEFLMV IHEQNNLNSE 
IRAITQKLKA KIEKPVTIRR QTITLSASVG RAILPQGAPL NANELIRQAD TAMYQAKRRS 
ISSP