| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dd1591_1647 |
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| Symbol | |
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| ID | 8117848 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dickeya zeae Ech1591 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012912 |
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| Strand | - |
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| Start bp | 1874881 |
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| End bp | 1878333 |
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| Gene Length | 3453 bp |
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| Protein Length | 1150 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 644852039 |
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| Product | transcription-repair coupling factor |
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| Protein accession | YP_003003979 |
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| Protein GI | 251789258 |
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| COG category | [K] Transcription
[L] Replication, recombination and repair |
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| COG ID | [COG1197] Transcription-repair coupling factor (superfamily II helicase) |
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| TIGRFAM ID | [TIGR00580] transcription-repair coupling factor (mfd) |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGATGCCTG AACAATATCG CTATACCTTG CCTGGCAAAG CCGGCGAACA ACGCCTGCTT
GGTCAGCTTA CCGGCGCGGC TTGCGCCGTC GAATGCGCAG AAATCGTTGA ACGTCATGCC
GGACTGGTGG TGCTGATTAC GCCCGACATG CAGAACGCCC TGCGGTTGCG TGACGAAATT
CAGCAGTTTA CCGGGCAACC GGTCATCACG CTGCCCGATT GGGAAACCCT CCCTTACGAC
AGCTTCTCAC CTCACCAGGA AATTATCTCC GCCCGTTTAT CCACGCTCTA CCAGCTTCCC
TCGCTGACGC GCGGCACCTT GATCCTGCCG GTCAATACCC TGATGCAGAA AGTGTGCCCG
CACGCGTTTT TGCACGGCCA TGCGTTGATG CTGAAAAAAG GGCAACGCCT GTCGCGCGAT
ACGCTACGCA ACCAACTGGA GCAGGCCGGT TACCGTAGCG TCGACCAGGT GATGGAGCAC
GGTGAATTTG CTACCCGCGG CGCACTGCTC GATCTGTTCC CGATGGGGAG CGAAGAGCCG
TTCCGTATCG ATTTTTTCGA CGATGAAATC GACAGCTTGC GGTTGTTCGA CGCGGATACC
CAACGCACGT TGAATGAAGT CGAACACATT TATCTGTTGC CGGCGCGGGA ATTTCCAACC
GACAAAAACG CCATCGAGCT GTTTCGCAGC CAATGGCGCG AGCAGTTCGA CGTCCGGCGC
GACGCCGAGC ACATCTACCA GCAAGTGAGC AAAGGAACCC TGCCCGCCGG CATCGAGTAT
TGGCAGCCGC TGTTTTTCAG CCAGCCGCTG CCGGCGCTGT TCAGCTATTT GCCGTCCGGT
ACGTTGCTGG TCAATACCGG CGACATTCAG CAGGGTGCGG AGCGTTTCTG GCAGGATGTT
CAGCAGCGCC ACGCCAGCCG CGGCGTCGAC CCGATGCGCC CATTGTTGCC GCCGGACGCG
CTGTGGTTAT CCGTTGAGGG CTTTTTTGCC GAACTCAAAC ACTGGCCGCG GGTACAACTG
CGCCAGGATA CGCTGCCGGA CAAAGCCGCC AACCTGAATC TGGGCTATCA GCCGTTGCCT
GACCTGGCGG TCCAGCATCA ACACAAATCG CCGCTGGATA CGCTGCGCCG GTTCGTCGAG
CAATTTAGCG GGCAGGTGGT GTTTTCCGTG GAGAGCGAAG GTCGCCGGGA AACCTTGCAA
GAGTTACTGT CCCGCATCAA GTTATCGCCA ACGCCGGTAA AACGCCTTGA ACAAGCCGCG
TCGCCGGGTT GCTATTTGAT GATAGGCGCC AGCGAGCACG GTTTTATTGA TACCCTGCGT
CAACGCGCGC TGATCTGCGA AAGCGACCTG CTGGGCGAAC GCGTCAGCCG CCGCCGTCAG
GACAGCCGCC GCACCATCAA TACCGATACG TTGATTCGCA ATCTGGCGGA ATTGCGCCCA
GGCCAACCGG TGGTACACCT TGAACACGGC GTCGGCCGTT ACGCCGGGCT GACCACGCTG
GAGGCCGGCG GTATCAAGGC GGAATACCTG ATTCTGCATT ACGCCGGCGA AGACAAGCTG
TACGTACCGG TATCCTCATT ACACCTTATC AGCCGTTATG CCGGCGGTGC GGAAGACAGC
GCACCGCTGC ACAAGTTAGG CGGCGACGCC TGGACGCGAG CACGGCAGAA AGCGGCGGAA
AAAGTCCGCG ACGTCGCGGC CGAGTTGCTG GATGTTTATG CCCAGCGCGC CGCTCATACC
GGTTTTGCGT TTAAACACGA TCGGGACCAG TACCAATTGT TCTGTCAGGG TTTTCCGTTC
GATACCACGC CGGATCAAGC GCAGGCCATC AATGCGGTGC TGAGCGATAT GTGCCGCCCG
CTGGCGATGG ACCGATTGGT GTGCGGCGAT GTCGGTTTCG GCAAAACCGA AGTGGCGATG
CGCGCCGCGT TTCTGGCGGT AGAGAACCAC AAGCAGGTGG CGGTACTGGT GCCGACGACC
TTGCTGGCGC AGCAGCACTT CGACAATTTT CGCGACCGTT TCGCCAACTG GCCGGTGCGC
ATTGACATGC TATCCCGCTT TCGCAGCCAG AAAGAACAGG CTCAGGTGCT GGAACAAACG
CAGGACGGCA AAGTGGATAT CCTGATCGGT ACGCATAAAT TACTGCAAAG CGATGTCCGC
TGGCGGGATT TGGGATTGCT GATCGTCGAT GAAGAACACC GATTCGGCGT GCGTCACAAA
GAGCGCATCA AAGCGATGCG CGCCAACGTC GATATTCTGA CGCTCACCGC CACCCCGATT
CCACGCACCC TGAACATGGC GATGAGCGGC ATCCGTGATT TGTCGATCAT CGCCACGCCG
CCGGCGCGCC GCCTGGCGGT GAAAACCTTT GTGCGCGAGT ACGATAGTCT GGTGGTGCGC
GAGGCGATGC TGCGTGAAAT TCTGCGCGGC GGCCAGGTGT ACTACCTCTA CAACGACGTC
GAAAATATTG ACAAGGCCAC CCAGCGACTG AGCGAGCTGG TGCCGGAAGC GCGCATCGCC
ATCGGTCACG GTCAAATGCG CGAGCGCGAT CTGGAGCGGG TGATGAACGA CTTCCACCAC
CAGCGCTTCA ATGTACTGGT GTGTACCACC ATTATTGAAA CGGGTATCGA TATTCCCAAC
GCGAATACCA TCATCATCGA ACGTGCCGAC CATTTCGGCC TGGCGCAATT GCACCAGTTG
CGCGGCCGCG TCGGGCGTTC CCACCATCAG GCTTACGCGT ACCTGCTGAC CCCGAATCCC
AAAGCGATGA GCAGCGATGC GCACAAGCGT CTGGAGGCTA TCGCTTCACT GGAAGATTTG
GGCGCAGGGT TTGCCCTCGC CACCCACGAT TTGGAAATTC GCGGCGCCGG CGAATTGCTG
GGGGAAGACC AGAGCGGCCA GATGGAAAGC GTCGGCTTTT CGCTGTACAT GGACTTGCTG
GAAAGCGCGG TGGAATCGCT CAAAGCCGGC CGGGAACCGT CGCTGGAAGA CTTGATCAGC
AGCCAGACCG ACGTCGAGCT ACGCCTGCCG GCGCTGTTGC CGGACGATTT TATTCCTGAC
GTCAATACCC GCCTGTCGTT CTACAAGCGT ATCGCCAGCG CCAAAAACGA TGGTGAACTG
GATGACCTGA AAGCGGAACT GATCGACCGT TTCGGCAAGC TGCCGGATGC CGCTCGTCAC
TTGCTGCTGG TAGCGGCACT GCGTCAACAG GCACAAGCGC TGGGTATTAA GCGGGTTGAA
GGGAATGACA AAGGGGGGTT CATCGAATTC AGCCAGCATA ATCGCGTCGA CCCGACGTAC
CTGATCGGTC TGTTGCAACG CGATGCTAAA GTATATCGAT TGGATGGCCC TACCCGATTG
AAATTCATCA AGGATCTGGC GGGATATCCG CAACGGCTGA CGTTTATCAC CCAGTTGCTG
GAAGAGATGA CGAAACACAC AAGTGCCGCC TGA
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| Protein sequence | MMPEQYRYTL PGKAGEQRLL GQLTGAACAV ECAEIVERHA GLVVLITPDM QNALRLRDEI
QQFTGQPVIT LPDWETLPYD SFSPHQEIIS ARLSTLYQLP SLTRGTLILP VNTLMQKVCP
HAFLHGHALM LKKGQRLSRD TLRNQLEQAG YRSVDQVMEH GEFATRGALL DLFPMGSEEP
FRIDFFDDEI DSLRLFDADT QRTLNEVEHI YLLPAREFPT DKNAIELFRS QWREQFDVRR
DAEHIYQQVS KGTLPAGIEY WQPLFFSQPL PALFSYLPSG TLLVNTGDIQ QGAERFWQDV
QQRHASRGVD PMRPLLPPDA LWLSVEGFFA ELKHWPRVQL RQDTLPDKAA NLNLGYQPLP
DLAVQHQHKS PLDTLRRFVE QFSGQVVFSV ESEGRRETLQ ELLSRIKLSP TPVKRLEQAA
SPGCYLMIGA SEHGFIDTLR QRALICESDL LGERVSRRRQ DSRRTINTDT LIRNLAELRP
GQPVVHLEHG VGRYAGLTTL EAGGIKAEYL ILHYAGEDKL YVPVSSLHLI SRYAGGAEDS
APLHKLGGDA WTRARQKAAE KVRDVAAELL DVYAQRAAHT GFAFKHDRDQ YQLFCQGFPF
DTTPDQAQAI NAVLSDMCRP LAMDRLVCGD VGFGKTEVAM RAAFLAVENH KQVAVLVPTT
LLAQQHFDNF RDRFANWPVR IDMLSRFRSQ KEQAQVLEQT QDGKVDILIG THKLLQSDVR
WRDLGLLIVD EEHRFGVRHK ERIKAMRANV DILTLTATPI PRTLNMAMSG IRDLSIIATP
PARRLAVKTF VREYDSLVVR EAMLREILRG GQVYYLYNDV ENIDKATQRL SELVPEARIA
IGHGQMRERD LERVMNDFHH QRFNVLVCTT IIETGIDIPN ANTIIIERAD HFGLAQLHQL
RGRVGRSHHQ AYAYLLTPNP KAMSSDAHKR LEAIASLEDL GAGFALATHD LEIRGAGELL
GEDQSGQMES VGFSLYMDLL ESAVESLKAG REPSLEDLIS SQTDVELRLP ALLPDDFIPD
VNTRLSFYKR IASAKNDGEL DDLKAELIDR FGKLPDAARH LLLVAALRQQ AQALGIKRVE
GNDKGGFIEF SQHNRVDPTY LIGLLQRDAK VYRLDGPTRL KFIKDLAGYP QRLTFITQLL
EEMTKHTSAA
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