| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dd1591_1477 |
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| Symbol | |
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| ID | 8117352 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dickeya zeae Ech1591 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012912 |
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| Strand | - |
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| Start bp | 1696183 |
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| End bp | 1698012 |
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| Gene Length | 1830 bp |
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| Protein Length | 609 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 644851868 |
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| Product | type IV conjugative transfer system coupling protein TraD |
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| Protein accession | YP_003003814 |
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| Protein GI | 251789093 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3505] Type IV secretory pathway, VirD4 components |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGGAGACA GTCATGTGAG AGGGGTTGAT CTCCCATCGC TGTCTGCCAT GCGTGACGCC
CGGCCAACAA CACTCAAGCG GGAGAATATT GCGATGGGAA CTCCTCTGAT GCAAAGGATG
AATACGTTTA TCGACGCCTT TTCCTTCTTC CTTTTATCGC TACAAAACCA TCCGGCAATA
TTATCGTTAC TTGCCGGACT GACGCTGCCA TTCATATTTA ACCTGCCACG GCAAGAAAGA
GAAAATGCGC CTTTGTGGTT GAAATCTGTC GCATGTGTCT CTGTCTTCTT TTTTACCTTC
GGAACCCTCT CCCCGCTGAC TATCGAGGGG CTGAGTTTTT TCTTTAACGC ACTCGACAGA
CACACGCTTT TCAACAGCCC GCTCTGGATA CTGACCGCCT CTTTTACGTT TGCCGGGTTA
ATATTTCATA TTATGGTCAG CAGACTTCTC TCGGGTGAGA TAGATAAACT AAAGCACCGA
TTGATTAAAA AAAGCAAACT GGAAAGAAGT ATCAGAACGG ATGTTCGGGA AGTAAAAAAC
ATGCTGCCTG ACAGCATTGC CTATAATCCG CTGGATCATA TTGACTTAAA CAACGGCGTT
TTTATTGGTC TTGATAAAGA CGATCAACCA CAATATATCT CCATTGACGA ATTTCAGTCC
CAGCACGCTG ACCTTATCGG CACCACAGGC TCCGGTAAAG GGGTCAGCGC CTGTGTTTTA
CTTTACCAGG CGATTCTTTC AGGTGAGGGG GTATTTGTCG AAGATCCTAA AAATGATGAG
TGGGCACCAC ATGTATTGCG GGAAGCCTGT CAGAAAGCGG GAAAACCATT CGTCCTCATT
AACCTGAATG CGCTCCATTT TCAGCTTGAT TTACTGGCGG ATATTTCACA CGAACAACTG
GAAGAACTGT TTAATGCCGG GTTTAGCCTG GGTAAAAAAG GTGAAGGTGC TGACTTTTAT
CGTATAGCCG ATCGTCGGGC AGCCAGAAAC GCCGCAGCCA TTTATGAAAA AGGGATGACG
TTACGTGACC TGTTTAATAC GCCCTTTGTC ACATCACTTG CGGAGGATAT GCCTGCTTTT
TATGGCGAGC TTGAGGAAAT CGCGTTAATT AATGCGATTA ATGCCAGTCA TGGTTTTTCT
CTAAAGACAA TATTTGATGA AGGTGGATGC TGTTACATTA TTGGCTCGAT GCGTAATCAA
AAAATCATAT CAGCTCAGCG CATGATATTA ACCCGTCTGA TTCAGATAGC CGAAACACGA
GACAGAATAA AAGAACAACC TCGCCCTGTT GCCATTTTTC TTGATGAACT TAAATATCAC
CTTTCCCGCC CGGCGCTTGA GGGGCTGGGT GCCGCGAGGG ACAAAGGTGT GCATATCATC
ATGGCCCACC AGTCGGTAAA AGATTTATAT GACTGTCCGG CCGATCTGGA TGGTGAGGCC
GTTGCAGGCT CGGTGATTGA GAACTGTAAA TTCATGCTGG TTTATCGTCT TCGTGATCCC
GACACGGCTG ACTGGGTGGC AAGAATGACC GGCTCTATTC TGGTTGATGA CGAAATGAGG
AAAGTGAAGA CGGATAGCTT CCTGACAGAG AAAATCGATA CAGACCGAAT GATCCGCCAG
GCAGAACGAT ATTACATCGA CACAAATATG CTGCTTAATC TGCCTAAATT TGTTGGCTTT
GTTTTTACGC AGAATGACCT TGCCAAAGCC ACAAAGCTTT CCCCTGTCCC GGCAAAAAAG
GAATCTCTCG CATTACTCTC ATTTGAACCA AAAATCGCTT TACAGGATGT AAATAAAGTC
CATGCGCATA AACCATCCGT TAACCTGTGA
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| Protein sequence | MGDSHVRGVD LPSLSAMRDA RPTTLKRENI AMGTPLMQRM NTFIDAFSFF LLSLQNHPAI
LSLLAGLTLP FIFNLPRQER ENAPLWLKSV ACVSVFFFTF GTLSPLTIEG LSFFFNALDR
HTLFNSPLWI LTASFTFAGL IFHIMVSRLL SGEIDKLKHR LIKKSKLERS IRTDVREVKN
MLPDSIAYNP LDHIDLNNGV FIGLDKDDQP QYISIDEFQS QHADLIGTTG SGKGVSACVL
LYQAILSGEG VFVEDPKNDE WAPHVLREAC QKAGKPFVLI NLNALHFQLD LLADISHEQL
EELFNAGFSL GKKGEGADFY RIADRRAARN AAAIYEKGMT LRDLFNTPFV TSLAEDMPAF
YGELEEIALI NAINASHGFS LKTIFDEGGC CYIIGSMRNQ KIISAQRMIL TRLIQIAETR
DRIKEQPRPV AIFLDELKYH LSRPALEGLG AARDKGVHII MAHQSVKDLY DCPADLDGEA
VAGSVIENCK FMLVYRLRDP DTADWVARMT GSILVDDEMR KVKTDSFLTE KIDTDRMIRQ
AERYYIDTNM LLNLPKFVGF VFTQNDLAKA TKLSPVPAKK ESLALLSFEP KIALQDVNKV
HAHKPSVNL
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