| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dd1591_1435 |
|---|
| Symbol | |
|---|
| ID | 8120477 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dickeya zeae Ech1591 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012912 |
|---|
| Strand | - |
|---|
| Start bp | 1635832 |
|---|
| End bp | 1637469 |
|---|
| Gene Length | 1638 bp |
|---|
| Protein Length | 545 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 56% |
|---|
| IMG OID | 644851830 |
|---|
| Product | glycoside hydrolase family 43 |
|---|
| Protein accession | YP_003003776 |
|---|
| Protein GI | 251789055 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG3507] Beta-xylosidase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAATGTA CGGCCGGGCT ACTGGCGTTC ATCGCGCTGG CCGCCTATGG GGAAGGCCCC
GTTGCCCCTT GTGGCGATAG CGCCGTCGTG TCCTGGGCCC AAGGGATTGA ACACCAGCGC
AAGGCGGATT TGGGTAACGG CTGCTATCTC AATCCGATTA TGTCCGGCGA TCATCCCGAC
CCCACTATCC TGAAAGACGG CCATGACTAT TACATGACCT TCTCATCTTT TGATGCCATT
CCCGGCCTGG TTATCTGGCA TTCTCAGGAT CTGATTAACT GGCAGCCGGT CGGTCCGGCG
GTCACGACGC CGGTAGATTC TATCTGGGCA CCGGAATTGG TGAAGCACAA CGATAAGTAC
TACCTCTACT TTATTACCAA CAAGACCGAC CCGGTTTCCG GTGCCAAAAC CAAGAAATTC
TATGTGATTA CCACCGACAA TATTCGCGGT GCCTGGACGC CGCCACGTGA GATCGTGGTT
AAAAGCGATA AGGGCGACAA CGGCGCCACC AGCGATCCCG GCCACGCCGT CGGTGAAGAC
GGCAAACGCT ACATTTTTAT GTCCGGCGGT GTTCGCGTGC AACTCAAGGA CGATGGCCTC
GCGGTTGCCG ACGGCGAGGC CGGTATCGCC AAAACGGTAT ACGCCGGCTG GCAATATCCG
GAGCAATGGG ATGTAGAAAG TTTTTCGCAG GAAGGGCCAA AGATGCTCAA ACATGGCGAT
TATTTCTACA TGGTGCTGGC CGAAGGCGGC ACGGCCGGTC CGCCCACCGG GCATATGGTC
ATCGCTGCAC GATCGCGCTC CATCAACGGT CCCTGGGAGA ACTCGCCCTA CAACCCGATT
ATTCGCACAC AAAGCGCGAG TGAAAAATGG TGGTCGCGCG GCCATGCCAC ACTGGTGGAA
GGGATGGATG GCCAGTGGTA CATGGTTTAT CACGGCTATG AAAACAGCTT CATGACGCTG
GGAAGGCAGG CGCTGCTGGA GCCGATCACA TGGACGGCGG ACGGGTGGTT TATCTCCGCC
GGTTATGACG TCGGCAAGCC GATTCCTCGC CCCGTCGGCG GCCATGCCGT GCCCCATGGC
ATGGCTTTTT CAGACAGTTT TCGGCCAGAG GTGTTCGACA GCGTCTGGAG TTTCTATATG
CCGGGTGAAA ATGAAAAAGC GCGGATTCGC TTTGACGACG GCAGCTTGCT TCTGCGCGCC
AAAGGCCGCT CTCCTAAAGA CACCACGCCC TTGTTTATTA ATGCCGGCGA TCTCGCTTAT
CAGGTGGATG TCGAAATAGC GTTTGAACCC AAAGCACAAG CCGGGCTGCT GTTGTTTTAT
AGCAACCGGC TGTACGCCGG TTTAGCGTTT AACGCCAACG GGACGGTCAT GCACCGCTAC
GGGCTGGAAC GCAACGGCGC CAAAATTGCC GATATCACCG GCAATACGGT GCATCTGCGG
CTGGTCAACC GACGTAACAT TTTGACGCTT TATACCAGCC CGGATGGCGA AAAATGGACC
AAGTACGGCG TACAGATGGA AGTCTCGGGC TACAACCAAA ACGTCGGCTA CGATTTTCAG
GCGTTACGAC CCGCTATCTA TGCCTCGGGC GAAGGCAATG TACGTTTCTC TCACTTCCGT
TATACCGCGC TGCCTTAA
|
|---|
| Protein sequence | MKCTAGLLAF IALAAYGEGP VAPCGDSAVV SWAQGIEHQR KADLGNGCYL NPIMSGDHPD
PTILKDGHDY YMTFSSFDAI PGLVIWHSQD LINWQPVGPA VTTPVDSIWA PELVKHNDKY
YLYFITNKTD PVSGAKTKKF YVITTDNIRG AWTPPREIVV KSDKGDNGAT SDPGHAVGED
GKRYIFMSGG VRVQLKDDGL AVADGEAGIA KTVYAGWQYP EQWDVESFSQ EGPKMLKHGD
YFYMVLAEGG TAGPPTGHMV IAARSRSING PWENSPYNPI IRTQSASEKW WSRGHATLVE
GMDGQWYMVY HGYENSFMTL GRQALLEPIT WTADGWFISA GYDVGKPIPR PVGGHAVPHG
MAFSDSFRPE VFDSVWSFYM PGENEKARIR FDDGSLLLRA KGRSPKDTTP LFINAGDLAY
QVDVEIAFEP KAQAGLLLFY SNRLYAGLAF NANGTVMHRY GLERNGAKIA DITGNTVHLR
LVNRRNILTL YTSPDGEKWT KYGVQMEVSG YNQNVGYDFQ ALRPAIYASG EGNVRFSHFR
YTALP
|
|---|
| |