| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dd1591_1376 |
|---|
| Symbol | |
|---|
| ID | 8118451 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dickeya zeae Ech1591 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012912 |
|---|
| Strand | + |
|---|
| Start bp | 1564997 |
|---|
| End bp | 1565776 |
|---|
| Gene Length | 780 bp |
|---|
| Protein Length | 259 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 53% |
|---|
| IMG OID | 644851771 |
|---|
| Product | cationic amino acid ABC transporter, periplasmic binding protein |
|---|
| Protein accession | YP_003003717 |
|---|
| Protein GI | 251788996 |
|---|
| COG category | [E] Amino acid transport and metabolism
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG0834] ABC-type amino acid transport/signal transduction systems, periplasmic component/domain |
|---|
| TIGRFAM ID | [TIGR01096] lysine-arginine-ornithine-binding periplasmic protein |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAAAAAA TGTTGAAGCT TTTGCCCCTC GCACTGGTAT TGGCTGCAGG CAGCGCATTC
GCCGAGGTTC CTAAAAATAT CAAGATTGGT ACTGACCCGA CCTACGCACC GTTTGAATCC
AAGGATGCCA GTGGTCAACT GGTGGGGTTT GATATCGACC TGGCAAAAGA GCTGTGCAAA
CGGATTCAGG CAAATTGCAC CTTTGTCGAG AGTGATTTCG ACGCGCTGAT CCCGTCTCTG
AAAGCGAAAA AGATCGATGC CATCATTTCT TCCCTGTCGA TCACTGAAAA GCGTCAGCAG
GAGATTGCGT TTACCGACAA ACTTTACGCC GCCAATGCAC GTTTGATTGC GAAAAAAGGC
TCGCCGATTC AGCCGACGCT GGAGGCGTTG AAAGGGAAAC GCGTCGGCGT GTTGCAGGCT
TCCACGCAAG AAGCTTACGC CAACCAGTAC TGGCAACCGA AGGGCGTGGA TGTGGTGGCC
TACCAGAATC AGGACCTGAT CTATGCCGAT CTGACCTCTG GCCGTATCGA TACCGCGTTT
CAGGATGAAG TTGCAGGCAG CGAAGGGTTC CTGAAACAGG CCGCGGGTAA AGACTATGCG
TTTGCCGGCC CGGCGGTGAA AGACGACAAA CTGTTCGGCG TCGGCACCGG TATGGGATTG
CGCAAGAACG AAACCGAGTT GAAAGCCGCT CTGGATAAAG CGTTTGCCGC CATGCGTCAG
GATGGCACTT ACGACAAGCT GGCGAAGAAG TACTTTGACT TCAACGTATA CGGTGATTAA
|
|---|
| Protein sequence | MKKMLKLLPL ALVLAAGSAF AEVPKNIKIG TDPTYAPFES KDASGQLVGF DIDLAKELCK
RIQANCTFVE SDFDALIPSL KAKKIDAIIS SLSITEKRQQ EIAFTDKLYA ANARLIAKKG
SPIQPTLEAL KGKRVGVLQA STQEAYANQY WQPKGVDVVA YQNQDLIYAD LTSGRIDTAF
QDEVAGSEGF LKQAAGKDYA FAGPAVKDDK LFGVGTGMGL RKNETELKAA LDKAFAAMRQ
DGTYDKLAKK YFDFNVYGD
|
|---|
| |