| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dd1591_1204 |
|---|
| Symbol | |
|---|
| ID | 8118756 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dickeya zeae Ech1591 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012912 |
|---|
| Strand | - |
|---|
| Start bp | 1366865 |
|---|
| End bp | 1369954 |
|---|
| Gene Length | 3090 bp |
|---|
| Protein Length | 1029 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 644851601 |
|---|
| Product | multidrug efflux system subunit MdtC |
|---|
| Protein accession | YP_003003550 |
|---|
| Protein GI | 251788829 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG0841] Cation/multidrug efflux pump |
|---|
| TIGRFAM ID | [TIGR00915] The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 5 |
|---|
| Plasmid unclonability p-value | 0.357144 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGAAGTTCT TCGCACTGTT TATCCATCGT CCGGTCGCCA CCACGTTGCT GGCGCTGGCG
ATAGCGCTAT GCGGGCTGCT CGGCTATCAG TTGCTGCCGG TATCGCCGCT GCCGCAGGTG
GATTACCCGG TGATTTCGGT CAGCGCCACC TTGCCCGGCG CGTCGCCGGA AACCATGGCG
TCGTCGGTGG CGACACCGCT GGAACGTTCG CTGGGCCGCA TCGCCGGCAT TAACGAAATG
ACGTCGATGA GCTCACTGGG CAGCACCCGC ATCATCCTGC AGTTTGCGTT GGATCGTGAC
ATCAACGGCG CGGCCCGTGA CGTGCAGGCG GCCATCAACG CCGCCCAGAG CCTGTTGCCA
AGCAGTATGC CGAGCCGTCC CTATTACCGT AAGGTGAACC CATCCGATGC GCCGATCATG
ATAATCACGC TGACGTCGGA CACTTACGGC CCCGGCCAAT TGTACGACTA TGCCTCGACC
CAGATTGCGC AACGCGTCTC GCAAATCGAC GGCGTCGGCG ACGTCACCAT CGGCGGCAGT
TCGTTACCGG CGGTCCGGGT GGCGCTCAAC CCGCAGGCGC TGTTTAATCA GGGCGTATCG
CTGGACGCCG TGCGCCAGTC GATCGCCCAG TCCAACGTGC GCCAGCCGCT CGGTAGCGTA
GACAGCGGCA GCACGCACTA CCAAATCCAG ACCAATGATG AGCTGAAAAC CGCAGACGCC
TATCGCTCGC TGATCATCCA CTACAACAAT GGCGCGCCGG TGCGTCTGAG TGATGTGGCG
ACGGTGAAGG ACTCGGTGCA AAACGTGCTC AACGCCGGGA TGACCAACGC CAAACCCGCC
GTACTGGTGC TGATCCGCCG GGCGCCGGAC GCCAACATCA TCTCTACCGT GGACGCGATC
CGCGCCGCTA TGCCGGAATT ACAGGCGATG TTGCCCGCCT CGATCACGTT GAATGTCGCG
CAAGACCGCT CACCGACGAT TCGCGCCTCG CTGCACGACG TGGAACGGTC GCTGACCATC
GCGGTATCGC TGGTGATTCT GGTGGTGTTT TTATTCCTGC GATCCGCACG CGCCACGCTG
ATCCCGGCTA TCGCCGTACC GGTGTCGTTG ATTGGCACCT TCTCCGCCAT GTACCTGTGC
GGTTTCAGTT TGAACAATCT GTCGCTGATG GCGTTGACCG TCGCCACCGG TTTTGTGGTG
GATGACGCCA TCGTGGTGCT GGAGAATATT TCCCGCCATA TCGAAGCCGG TATGAAGCCG
TTGCAAGCCT CGCTACAGGG GGTGCGGGAA GTCGGGTTCA CCGTGGTATC GATGAGCCTG
TCGCTGATCG CCGTGTTCAT TCCATTGCTG TTCATGGATG GCCTGCCCGG CCGCTTGTTC
CGCGAATTTT CGATTACGTT ATCGGTCGCC ATTCTGATCT CATTGTTGGT ATCCATCACG
CTGACGCCGA TGATGTGCGC CCGCCTGCTG CGCCCTCATA CGCCCCGCAG CCAGCCGCGT
ACCCGCGGTT TCAACCGGCT GTTGCTTGGG CTGCAACAAG GCTACGGACG CAGCCTGCGT
TGGGTGTTGA ACCACTCGCG CTGGGTAATG ATGGTGCTGC TGGGGACGAT CGGCCTGAGC
GTCTGGCTGT ATATCAGCAT TCCCAAAACC TTCTTCCCGG AACAGGACAC CGGCCGGCTG
ATGGGCTTTA TCCAGGCCGA CCAGAGCATC TCCTTCCAGG CGATGAAGCG CAAATTGCAA
GACTTCATGA CCATCGTGCG CGCCGACCCG GCGGTGGATA ATGTCACCGG GTTTACCGGT
GGAATGCGCA CCAACAGCGG CTCAATGTTT ATTAGCCTGA AACCGCTTGC CCAGCGCGAC
GTTAACGCCC AGCAGGTGAT TACCCGGCTG CGCGCCAAAC TGGCGAAGGA GCCGGGCGCC
AATCTGTACC TGATGGCGGT GCAGGATGTG CGTATCGGTG GGCGCGAAGC TAACGGCGGT
TACCAGTTCT CACTGTTATC GGATGATTTG GCGGTGTTAC GGAGCTGGGA ACCCAAAATT
CGCGATGCGC TGAGCAAATT GCCGCAACTG GCGGACGTCA GTTCCGACCA GCAGGACAAG
GGCGCCGAAT TGATGATGGT CTACGATCGT GATGCCATGG CACGGCTTGG CATCAATGTG
TCCAGCGTCA ACGCGTTGCT GAACAATGCT TTCGGCCAGC GGCAGATTTC CACCATTTAC
CAGCCGATGA ACCAATATAA AGTGGTGATG GAGGTGGATT CGGCTTACAC CCAGGACCCC
AGCTCGCTGG ACAAAATGTT TGTTATCAAC AACGACGGCA AGCCGATCCC GTTGTCATTC
TTTGCTCACT GGCAACCGGC CAACGCGCCG CTGGCGGTTA ACCATCAGGG GTTGTCGGCC
GCGGCGACCC TCTCGTTCAA CCTGCCGGAA GGCGTCAGCC TGTCGGATGC CACCAACGCC
ATCGAACGCA CCATGACCGC AGTGGGCGTG CCGCCTACGG TTCGCGGGCA ATTTGCCGGC
ACCGCGCTGG CGTTCCAACA ATCGCAGCAT TCGCAGGTGG TGCTGATTAT CGCGGCGATC
CTGACGGTCT ACATCGTGCT GGGAATATTG TATGAAAATG TCGCCCACCC GCTGACCATT
CTCTCTACCC TGCCCTCTGC CGGCGTCGGC GCACTGCTGG CGCTGGAGCT GTTCAACAAA
CCGTTCAGCC TGATTGCGCT GATCGGTATT TTGTTGCTGA TCGGCATTGT GAAGAAAAAC
GCCATCATGA TGGTGGATTT TGCGCTGGTG GCGCAGCGGG AAGGAAAACT GTCGGCGCAG
GAGGCGATTT TCCGCGCCTG CATGTTGCGT TTTCGCCCGA TCATGATGAC CACCATGGCC
GCGCTGTTCG GCGCGTTGCC GCTGGTGCTG AGCAACGGCG ACGGCTCGGA ACTGCGTCAG
CCGCTGGGTA TCACCATTGT CGGCGGGCTG GTGATGAGCC AGTTGCTGAC GCTGTACACC
ACGCCGGTGG TGTACCTGTT CTTTGACCGT CTGCATTGGC GCCGTCGTGA TCGTACCGAT
ACGGCCGGGC ATACCGAACC GTTGGCCTGA
|
|---|
| Protein sequence | MKFFALFIHR PVATTLLALA IALCGLLGYQ LLPVSPLPQV DYPVISVSAT LPGASPETMA
SSVATPLERS LGRIAGINEM TSMSSLGSTR IILQFALDRD INGAARDVQA AINAAQSLLP
SSMPSRPYYR KVNPSDAPIM IITLTSDTYG PGQLYDYAST QIAQRVSQID GVGDVTIGGS
SLPAVRVALN PQALFNQGVS LDAVRQSIAQ SNVRQPLGSV DSGSTHYQIQ TNDELKTADA
YRSLIIHYNN GAPVRLSDVA TVKDSVQNVL NAGMTNAKPA VLVLIRRAPD ANIISTVDAI
RAAMPELQAM LPASITLNVA QDRSPTIRAS LHDVERSLTI AVSLVILVVF LFLRSARATL
IPAIAVPVSL IGTFSAMYLC GFSLNNLSLM ALTVATGFVV DDAIVVLENI SRHIEAGMKP
LQASLQGVRE VGFTVVSMSL SLIAVFIPLL FMDGLPGRLF REFSITLSVA ILISLLVSIT
LTPMMCARLL RPHTPRSQPR TRGFNRLLLG LQQGYGRSLR WVLNHSRWVM MVLLGTIGLS
VWLYISIPKT FFPEQDTGRL MGFIQADQSI SFQAMKRKLQ DFMTIVRADP AVDNVTGFTG
GMRTNSGSMF ISLKPLAQRD VNAQQVITRL RAKLAKEPGA NLYLMAVQDV RIGGREANGG
YQFSLLSDDL AVLRSWEPKI RDALSKLPQL ADVSSDQQDK GAELMMVYDR DAMARLGINV
SSVNALLNNA FGQRQISTIY QPMNQYKVVM EVDSAYTQDP SSLDKMFVIN NDGKPIPLSF
FAHWQPANAP LAVNHQGLSA AATLSFNLPE GVSLSDATNA IERTMTAVGV PPTVRGQFAG
TALAFQQSQH SQVVLIIAAI LTVYIVLGIL YENVAHPLTI LSTLPSAGVG ALLALELFNK
PFSLIALIGI LLLIGIVKKN AIMMVDFALV AQREGKLSAQ EAIFRACMLR FRPIMMTTMA
ALFGALPLVL SNGDGSELRQ PLGITIVGGL VMSQLLTLYT TPVVYLFFDR LHWRRRDRTD
TAGHTEPLA
|
|---|
| |