| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dd1591_1075 |
|---|
| Symbol | |
|---|
| ID | 8118227 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dickeya zeae Ech1591 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012912 |
|---|
| Strand | + |
|---|
| Start bp | 1238015 |
|---|
| End bp | 1239532 |
|---|
| Gene Length | 1518 bp |
|---|
| Protein Length | 505 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 644851477 |
|---|
| Product | diguanylate cyclase with PAS/PAC and GAF sensors |
|---|
| Protein accession | YP_003003426 |
|---|
| Protein GI | 251788705 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG2199] FOG: GGDEF domain |
|---|
| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGTATGAAA TTATAATAAC CCTATTAATA GTACTCTTGG GGATTTCTTC GGCAAGAAGC
CGTAAATTTC AGGAAAAAGC CAACGCAGAA CAAAAAAAGC AGGACTTCCT GAACATGGTG
TTCTTCGCTG CTGAATACAG CCCATCATCC ATTATGATCG CTAATGAAAG CTGTGAGATT
GTGTACGTAA ACCGTCAGTT TACCGTTATG TCGGGTTACG AAGCGGAAGA AGTGATCGGT
CGCAAGACGA ATATATTGAG CTCAGGCATG ACCAATGCCA GTGTGTATGA AGAACTCTGG
TCCACCTTGA ATAAAGGCGA GATCTGGAAC GGCGAGTTCG TCAACCGTAA GAAAAACGGT
CAGTTGTATT GGGAAAAGGC CAGCATCGTT AAGATATATA ATAAAGCCAG CGATGCGGTT
CAGTATGTCA GCATAAAAAT GGATATCACT GAGCGTAAGA CTCAGGAACA CCATGACAAC
TCCTACAACC GTGCGCTGGA GTTGTTGTCG AGCGGTGCGC CATTGAAGGA TATTCTGGAT
GCGATCATCT TCAGCGTTGA GGAGAAAAAT CCCGGTCGAA TTGTCTGTTC TGTCTTGCTG
GTGGATAAAG AAAAGAAATG CCTGACGCTT GGCTCCGCTC CCAGCCTGCC GGGTTTTTAC
AAGAATGCTA TCCACAATGT GAAGATAGCC GATGGTGCTG CGTCGTTTGG TTCGGCGGCT
TATTCTGGCA AACGCGTTAT TGCCGAGGAC ATTTCCACAC ATCCCCATTG GGCGCTGTAT
AAAGGCCTGG CATTGTATGC CGGCTTGCGT TCTTGTTGGT CTGAACCTAT TTTTGGGCAG
AACAAAGAGA TCCTGGGGGT ACTGAGTGTT TATCATCGTA AAGTGTATTC CCCAACAGAG
GATGAAATCG CCTCTATTGA GAAATCGGCG CAATTGGTAG CCGTCGCTAT CGAGCGCTAT
CGGGCGATTG ATATGTTGCG TCGTAGTGAA GAGCATTATC GGCAATTGGC CCATTATGAT
TCTCTGACCT CATTGGCTAA TGGCCTGACG TTCGCCGAGC AGATGGAACA GGCGATCCAG
TTATCCCGTC AGACAAACCG GAAGATTGCG CTGATGTTTC TCGATCTGGA TAAGTTTAAG
CAGATTAATG ACACCTTCGG TCATGCAACC GGGGATCTTC TGTTAAAAGA GGCGGCGGCG
CGTATGCGGG GAGCGGTACG CGAGACTGAT ACGGTTTATC GCCGCAGCGG AGACGAATTT
ATCATCTTGT TGCAGGGCAT TAAGGAGGTT GAAAATACCT TGTATGTTGC GGACAAGATT
CACCATGCGC TTAATGAGCC TTTCTATATT GAAGGGAAGA AGTTAGATAT TTCATGTAGC
ATCGGGATAG CGCTGTACCC TGAGCACGGA ACGGATTCAT TAACGTTGGC AATCAATGCC
GACGCTGCAA TGTATCAGGC GAAAGCATTG GGACGCAGCC AGACTCAGAT CTATCATGAC
CTGAACACCC ATCAATAA
|
|---|
| Protein sequence | MYEIIITLLI VLLGISSARS RKFQEKANAE QKKQDFLNMV FFAAEYSPSS IMIANESCEI
VYVNRQFTVM SGYEAEEVIG RKTNILSSGM TNASVYEELW STLNKGEIWN GEFVNRKKNG
QLYWEKASIV KIYNKASDAV QYVSIKMDIT ERKTQEHHDN SYNRALELLS SGAPLKDILD
AIIFSVEEKN PGRIVCSVLL VDKEKKCLTL GSAPSLPGFY KNAIHNVKIA DGAASFGSAA
YSGKRVIAED ISTHPHWALY KGLALYAGLR SCWSEPIFGQ NKEILGVLSV YHRKVYSPTE
DEIASIEKSA QLVAVAIERY RAIDMLRRSE EHYRQLAHYD SLTSLANGLT FAEQMEQAIQ
LSRQTNRKIA LMFLDLDKFK QINDTFGHAT GDLLLKEAAA RMRGAVRETD TVYRRSGDEF
IILLQGIKEV ENTLYVADKI HHALNEPFYI EGKKLDISCS IGIALYPEHG TDSLTLAINA
DAAMYQAKAL GRSQTQIYHD LNTHQ
|
|---|
| |