| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dd1591_1043 |
|---|
| Symbol | |
|---|
| ID | 8120316 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dickeya zeae Ech1591 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012912 |
|---|
| Strand | + |
|---|
| Start bp | 1201702 |
|---|
| End bp | 1202859 |
|---|
| Gene Length | 1158 bp |
|---|
| Protein Length | 385 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 56% |
|---|
| IMG OID | 644851439 |
|---|
| Product | carbohydrate diacid transcriptional activator CdaR |
|---|
| Protein accession | YP_003003394 |
|---|
| Protein GI | 251788673 |
|---|
| COG category | [K] Transcription
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG3835] Sugar diacid utilization regulator |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCGTCAT ACCACCTGAA TAACAAACTG GCACAGGAAA TCGTTGCTCG CACAATGCAA
ATTATTGATA GCAATATCAA TGTGATGGAT GCACGTGGAC GTATTATCGG CAGCGGCGAC
CGGGAGCGCA TTGGTGAATT GCATGAAGGC GCGCTATTGG TGCTGTCGCA GGGACGGGTA
GTGGATATTG ATGACGCGGT AGCGCGCCAT CTGCATGGCG TTCGGCCCGG CATCAACCTG
CCATTGAAAA TCGACGGCGA AATCGTCGGC GTAATTGGTT TGACCGGCAA CCCCGGCCAG
TTGCGCCAGT ACGGTGAATT GGTGTGCATG ACGGCTGAGA TGATGCTGGA ACAGGCGCGA
TTGCTGCATA TGCTGGCGCA GGATAGCCGT TTACGGGAAG AGTTGGTGTT GAACCTGATT
CGCACGGATG AGCTGTCGCC GGCACTGATG GAGTGGGCTC AGCGTTTGGG GATCGATCTT
AACCAACCGC GTGTTGCGGC CGTGGTAGAG GTGGATAGCG GTCAATTAGG GGTGGATAGC
GCTATGGCGG AGTTACAGCA ATTGCAGACG TTGCTGACGA CGCCGGAGCG CAACAATTTG
ATTGCGATTG TTTCACTGAC AGAGATGGTA GTGCTGAAGC CGGCGCTCAA CAACCATAAC
CGCTGGGATG CCGAGGATCA CCGTCGCCGC GTCGACACAC TGTTGTCGCG TATGGAGGAA
AGCAGCCGGT TGCGGGTGAG AATAGCGTTA GGCAACTATT TTACCGGCCC CGGCAGTATC
GCACGTTCCT ACCGTACCGC CCGAACCACC ATGAGTGTCG GCAAACAACG TATGCCGGCT
CAGCGCAGCT ATTTCTATCA GGATCTCATG TTGCCGGTAC TGCTTGATAG CCTGCGTGGT
GGCTGGCAGG CCAACGAACT GGTGCGCCCA TTAGCCAGGC TGAAGGCGAT GGACAGCAAC
GGTTTGCTGC GTCGCACGCT TAACGCCTGG TTTCGCAACA ATGTGCAGCC AGGGGCGACC
GCCAAGGCGT TATTTGTGCA TCGCAATACG CTGGAGTACC GGCTAAACCG CATCTCCGAA
CTCACCGGGC TGGATCTGGG CAATTTTGAC GATCGGCTGT TGCTGTATGT CGCACTGCAA
CTGGATGAAG AACAGTAA
|
|---|
| Protein sequence | MASYHLNNKL AQEIVARTMQ IIDSNINVMD ARGRIIGSGD RERIGELHEG ALLVLSQGRV
VDIDDAVARH LHGVRPGINL PLKIDGEIVG VIGLTGNPGQ LRQYGELVCM TAEMMLEQAR
LLHMLAQDSR LREELVLNLI RTDELSPALM EWAQRLGIDL NQPRVAAVVE VDSGQLGVDS
AMAELQQLQT LLTTPERNNL IAIVSLTEMV VLKPALNNHN RWDAEDHRRR VDTLLSRMEE
SSRLRVRIAL GNYFTGPGSI ARSYRTARTT MSVGKQRMPA QRSYFYQDLM LPVLLDSLRG
GWQANELVRP LARLKAMDSN GLLRRTLNAW FRNNVQPGAT AKALFVHRNT LEYRLNRISE
LTGLDLGNFD DRLLLYVALQ LDEEQ
|
|---|
| |