Gene Dd1591_0992 details

Gene Information

• Locus tag: Dd1591_0992
• Symbol: rimM
• ID: 8121139
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Dickeya zeae Ech1591
• Kingdom: Bacteria
• Replicon accession: NC_012912
• Strand: +
• Start bp: 1143512
• End bp: 1144060
• Gene Length: 549 bp
• Protein Length: 182 aa
• Translation table: 11
• GC content: 47%
• IMG OID: 644851383
• Product: 16S rRNA-processing protein RimM
• Protein accession: YP_003003344
• Protein GI: 251788623
• COG category: [J] Translation, ribosomal structure and biogenesis
• COG ID: [COG0806] RimM protein, required for 16S rRNA processing
• TIGRFAM ID: [TIGR02273] 16S rRNA processing protein RimM

Plasmid Coverage information

• Num covering plasmid clones: 6
• Plasmid unclonability p-value: 0.0584349
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAGCAAGC AACTCAGCCC GAAAGCCCCG GTCAACCCGA TTGTATTGGG AAAATTGGGG 
TCGACGTACG GCATTAAAGG TTGGCTCAGA GTGTTTTCAT CCACCGAAGA CGCCGAAAGC 
ATTTTTGATT ATCAGCCTTG GTTCATCCGG AATAAAGGGC TGTGGCAACC GATCGAGATC 
GAGAGCTGGC GGCACCATAA TCAGGACCTA GTCATTAAAC TGAAAGGTAT TGATGATCGG 
GAAGCGGCGA ATTTATTGAC CAATTGCGAA ATTGTCGTGG ATTCAGCCCA ATTACCTGAA 
CTGGATGAAG GCGATTATTA CTGGAAGGAT CTTATTGGTT GCGACGTTGT CACCATCGGT 
GGCTATGAGC TGGGAAAAGT CATAGACATG ATGGAAACCG GTTCGAATGA CGTCCTGGTA 
GTAAGAGCCA ACCTGAAAGA TGCTTACGGG GTCAAGGAAC GGTTGATTCC GTTTCTGACC 
GAACAGGTTA TCAAGCACAT TGACCTGTCT ACTCATCGTA TTGAAGTAGA TTGGGATCCT 
GGTTTTTGA 

 

Protein sequence

MSKQLSPKAP VNPIVLGKLG STYGIKGWLR VFSSTEDAES IFDYQPWFIR NKGLWQPIEI 
ESWRHHNQDL VIKLKGIDDR EAANLLTNCE IVVDSAQLPE LDEGDYYWKD LIGCDVVTIG 
GYELGKVIDM METGSNDVLV VRANLKDAYG VKERLIPFLT EQVIKHIDLS THRIEVDWDP 
GF