| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dd1591_0838 |
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| Symbol | truD |
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| ID | 8120654 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dickeya zeae Ech1591 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012912 |
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| Strand | + |
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| Start bp | 971304 |
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| End bp | 972362 |
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| Gene Length | 1059 bp |
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| Protein Length | 352 aa |
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| Translation table | 11 |
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| GC content | 55% |
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| IMG OID | 644851224 |
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| Product | tRNA pseudouridine synthase D |
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| Protein accession | YP_003003196 |
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| Protein GI | 251788475 |
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| COG category | [S] Function unknown |
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| COG ID | [COG0585] Uncharacterized conserved protein |
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| TIGRFAM ID | [TIGR00094] tRNA pseudouridine synthase, TruD family |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGTGATGG CGTGTGAATC ACTGTTTTGG CTGCATGGTG AACCTGTCGC TACGGGAATA
CTCAAGGCAT CGCCGGATGA TTTCTTCGTT GCCGAAGATT TGGGGTTTAC CGCAGACGGT
GATGGTGAAC ATGTGCTGGT GCGCCTGCGC AAACGAGGAT GCAATACGGT TTTTGTGGCG
GAAGCGCTGG CGAAGTTCGC CGGGATCCCG GCACGTTCCG TCAGTTATGC CGGATTGAAG
GATCGTCATG CCGTGACCGA ACAGTGGTTT TGTCTTCATT TGCCGGGAAA AGTGGACCCG
GAATGGTCGG CATTTGCACT GGAAGGGTGT GAAATCCTTG AAGCGCAGCG CCATCGCCGT
AAACTGCGTA TTGGCGCGTT ACGCGGCAAC CATTTCAGCT TGGTGCTGCG TGAGATTAGC
AACCGGCCTG ATGTTGAAAA CCGTCTGGCC TTAATTGCAG CCAGAGGCGT GCCTAATTAT
TTCGGTAGTC AGCGTTTTGG TCATGATGGC AATAATCTGG AACAGGCCCG GCGTTGGGCG
AGTAACGAGA TTCGTGTTAA AGAACGTAGT AAGCGAAGCT TCTATCTTTC CGCTGTTCGT
AGTGAGCTCT TTAACCAGAT AGCCAGTGCC CGTCTGGCGA CGTATGGCGC AACGCAGGTC
TTAACGGGCG ATGCGCTGCA ACTGACTGGT CGCGGTAGTT GGTTCGTGGT TAAACCGGAC
GACGTACAAG CGAGCGCAGA CGTACAATCG CGTGTAAATG CCGGCGAGTT ACAGATTACC
GCTGCATTAC CCGGGCAGGG GGAACCAGGC GTGCAAGCAC AGGCACTGGC GTTTGAGCAG
TTGTGTCTGC AGGAGCAATC GCTGTTGCTG TCATTGCTGA CGCGCGAACG GGTGGAGAGC
GCACGCCGCG CCATCATGCT GTATCCGCAA GAGATGCGCT GGTCATGGCA GGATGACGCT
ACGCTTGCGT TACACTTTTG GTTGCCTGCC GGATGCTTTG CTACCAGCGT GGTGCGAGAG
TTACTGCTTC CTGTTGCGCA GGAAAACACC GAGTCATAA
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| Protein sequence | MVMACESLFW LHGEPVATGI LKASPDDFFV AEDLGFTADG DGEHVLVRLR KRGCNTVFVA
EALAKFAGIP ARSVSYAGLK DRHAVTEQWF CLHLPGKVDP EWSAFALEGC EILEAQRHRR
KLRIGALRGN HFSLVLREIS NRPDVENRLA LIAARGVPNY FGSQRFGHDG NNLEQARRWA
SNEIRVKERS KRSFYLSAVR SELFNQIASA RLATYGATQV LTGDALQLTG RGSWFVVKPD
DVQASADVQS RVNAGELQIT AALPGQGEPG VQAQALAFEQ LCLQEQSLLL SLLTRERVES
ARRAIMLYPQ EMRWSWQDDA TLALHFWLPA GCFATSVVRE LLLPVAQENT ES
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