| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dd1591_0813 |
|---|
| Symbol | |
|---|
| ID | 8120629 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dickeya zeae Ech1591 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012912 |
|---|
| Strand | - |
|---|
| Start bp | 938363 |
|---|
| End bp | 941131 |
|---|
| Gene Length | 2769 bp |
|---|
| Protein Length | 922 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 56% |
|---|
| IMG OID | 644851199 |
|---|
| Product | hybrid sensory histidine kinase BarA |
|---|
| Protein accession | YP_003003171 |
|---|
| Protein GI | 251788450 |
|---|
| COG category | [K] Transcription
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG0642] Signal transduction histidine kinase
[COG0745] Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 5 |
|---|
| Plasmid unclonability p-value | 0.325502 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACCAAAT ACAGTCTGCG CGCACGGATG ATGATCCTGA TTCTGGCCCC AACCATGCTG
ATCGGGTTGT TGCTCAGTAG CTTTTTCGTC ATCCACCGTT ACAACCAGTT GCAGGAACAG
TTGGCCGATG CCGGCGCCAG CATCATCAAA CCGCTGGCGG CCAACAGCGC CTATGCGTTG
ACCCAGCGCC AGCCGGAGTC GTTGCGGCAA CTGGTCAATA TGCTGCATCG TCATCATTCC
GGTATTGTAC GCGCCATCAG CGTATTTGAT GCCCGCAACC AGTTGATCGT CACCAGCAAC
ACCAACAGCC CTCACGGCCA GTTTTTGCTG CAAGTGCCGC CGGGCACCCC TATACCGACC
ATGCTACAGC TTCGAAACGA AGGGGAGTGC CTGGTGTTGC AGATGCCTAT CGAAAACGAG
GGCGATCTCT CCGCCAGTAC CTTGATCAGC CGGCAGGCGC CGATGGGGTA TGTCGCGGTC
GAACTGGATT TGAACAGCAT CCGGTTGCAG CAATACCGGG AGATGTTCAT GGCCGCGATG
CTGCTGCTGT TTTGTATGGG AGTGGCGATG TTGCTGGCTT ATCGCCTGAT GCGCGACGTC
ACCACGCCCA TCCGCAACAT GGTGGAAACG GTGGATCGTA TCCGACGCGG TCAGTTGGAC
AGCCGGGTGG AAGGCTATAT GCTGGGCGAA CTGGACATGC TGAAAAACGG CATCAACTCG
ATGGCGATGT CGCTCACCGC GTATCACGAG GAGATGCAGC AAAATATCGA TCAAGCCACC
TATGATCTGC GCGAAACGCT CGAGCAAATG GAGATCCAGA ACGTCGAGTT GGATCTGGCT
AAAAAACGGG CGCAGGAAGC GGCGCGCATC AAATCCGAAT TTCTGGCCAA CATGTCCCAC
GAACTGCGCA CGCCGCTTAA CGGCGTCATC GGTTTCACCC GCCAGACGTT GAAAACCCAA
CTGACGACGA CCCAGAAGGA TTATCTGCAA ACCATTGAGC GATCTGCCAA TAATCTGCTC
AACATCATCA ATGACGTGCT GGATTTCTCC AAGCTGGAAG CCGGGAAATT GGTGCTGGAG
AATATTCCGT TCTCGCTGCA TAACACGCTG GATGAAGTGA TTATGCTGCT GGCGCATACC
GCCCATGAAA AAGGGCTGGA GCTCACGCTG AACATTCAGC ATGACGTGCC GGAGCAGTTT
GTCGGCGATC CGCTGCGTTT ACAGCAAATC GTCACCAACC TGTTGGGCAA CGCCATCAAA
TTTACCGAGC AAGGCAACAT TGATATTCGC ATCGAAAAGC GCAAGCAGGA AAATCTGCAG
GTGCTGCTGG AAATCCAGAT TAAGGATACC GGCATCGGTA TCGCCGAAGC GCAGCAAACC
CAGCTGTTTC AGGCGTTCCG CCAGGCGGAT ACCAGCATTT CGCGCCAGCA CGGCGGCACC
GGTCTGGGGC TGGTGATCAC CCAGCGGCTG GTGCGGGAAA TGGGCGGCGA TATCAGCTTC
CACAGCAAGC CGAATCAGGG CACCACCTTC TGGTGTACCG TCAACCTGCA GTTGAACCCG
CACATGCTGG AACCTGATTA TCACTTTGAT CGTTTGCAGG GCAAACATCT GGCCTACGTG
GAAACCAACC CGGCGGCGGC CCAGGCGACG CTGGACATTC TGGTGCATAC GCCGCTCACC
GTCAGCTACA GCCCGACGCT GGAACAGTTG CCGGAACGGA CTTTCGATAT CCTGTTAATC
GGCGTGCCGA TCCACTTCCG CAATACGCTG CTGGATTTTA CGCCGCAAAT CCGCGACTTC
TGCCGTCTGG CATCCAGCGT GATTCTGGCG CTGCCCAGCA TGGCGGAGCT GGAAGCGGAG
CAACTGATGT CGTTCGGTAT TCATGCCAGC CTGAGCAAAC CCATCACGGC GCCCCGGTTG
CTGTCGCTGT TGCAGGATAA CAGCCTGTTT AACCAGGATA ATGAGGTGCA TACGCTGCCG
CCTCCCACGG CATCGTTCAA TCGTTTGCCG CTCAATGTGA TGGCGGTGGA CGACAATCCG
GCCAATCTGA AGCTGATTGG CGCCTTGCTG GAAGAGCAGG TGGAAAACAT TATTTTGTGT
GAGAACGGCG CCGACGCCAT CGCCCGTGCA CAGGAAACGC GTTTGGATAT CATCCTGATG
GATATTCAGA TGCCCGGCAT GGACGGGTTG CAAGCCAGCG AGCATATTCG CCGCTTACCC
CAACATATGC ATACGCCGAT CGTCGCAGTC ACCGCGCATA CCATGAGCGG CGAACGTGAA
GAGCTGTTGC AATCCGGTAT GGATGATTAT TTGTCCAAAC CGATTGACGA ACAGATGCTG
CGCCAGACGT TGCTAAAACA CGCCTTCAAA CCGCAACATC CACAACCGGA GCCGGCTTCT
CCCACCATCA GCGCGCCGTC GCCGTTGTCG CTGGACTGGG ATCTGGCGTT ACGGCAAGCC
GCCAGCAAAC CGGATCTGGC ACGCGACCTG CTGGCGATGT TGCTGGAATT CCTGCCCGAC
GTGCGTCGTC AGGTCAACGC GGTACTGGAT GGCAATCCAC CGGACCATCT GGTCGACATC
ATTCACAAGT TGCATGGCAG TTGCAGCTAT AGCGGCGTGC CGCGACTCAA ACAGATTTGC
CATTACCTCG AGCAGTCGCT GCGTAAAGGC ATATCCGTGA ACGAACTCGA GCCGGAATGG
CTGGAATTGA TGGATGAAAT GGCAAACGTT GAAAAGGCCG CACGCAAACG GCTGGCAATC
TCAACCTGA
|
|---|
| Protein sequence | MTKYSLRARM MILILAPTML IGLLLSSFFV IHRYNQLQEQ LADAGASIIK PLAANSAYAL
TQRQPESLRQ LVNMLHRHHS GIVRAISVFD ARNQLIVTSN TNSPHGQFLL QVPPGTPIPT
MLQLRNEGEC LVLQMPIENE GDLSASTLIS RQAPMGYVAV ELDLNSIRLQ QYREMFMAAM
LLLFCMGVAM LLAYRLMRDV TTPIRNMVET VDRIRRGQLD SRVEGYMLGE LDMLKNGINS
MAMSLTAYHE EMQQNIDQAT YDLRETLEQM EIQNVELDLA KKRAQEAARI KSEFLANMSH
ELRTPLNGVI GFTRQTLKTQ LTTTQKDYLQ TIERSANNLL NIINDVLDFS KLEAGKLVLE
NIPFSLHNTL DEVIMLLAHT AHEKGLELTL NIQHDVPEQF VGDPLRLQQI VTNLLGNAIK
FTEQGNIDIR IEKRKQENLQ VLLEIQIKDT GIGIAEAQQT QLFQAFRQAD TSISRQHGGT
GLGLVITQRL VREMGGDISF HSKPNQGTTF WCTVNLQLNP HMLEPDYHFD RLQGKHLAYV
ETNPAAAQAT LDILVHTPLT VSYSPTLEQL PERTFDILLI GVPIHFRNTL LDFTPQIRDF
CRLASSVILA LPSMAELEAE QLMSFGIHAS LSKPITAPRL LSLLQDNSLF NQDNEVHTLP
PPTASFNRLP LNVMAVDDNP ANLKLIGALL EEQVENIILC ENGADAIARA QETRLDIILM
DIQMPGMDGL QASEHIRRLP QHMHTPIVAV TAHTMSGERE ELLQSGMDDY LSKPIDEQML
RQTLLKHAFK PQHPQPEPAS PTISAPSPLS LDWDLALRQA ASKPDLARDL LAMLLEFLPD
VRRQVNAVLD GNPPDHLVDI IHKLHGSCSY SGVPRLKQIC HYLEQSLRKG ISVNELEPEW
LELMDEMANV EKAARKRLAI ST
|
|---|
| |