| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dd1591_0733 |
|---|
| Symbol | |
|---|
| ID | 8119456 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dickeya zeae Ech1591 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012912 |
|---|
| Strand | + |
|---|
| Start bp | 844339 |
|---|
| End bp | 845601 |
|---|
| Gene Length | 1263 bp |
|---|
| Protein Length | 420 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 644851120 |
|---|
| Product | diaminopimelate decarboxylase |
|---|
| Protein accession | YP_003003092 |
|---|
| Protein GI | 251788371 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0019] Diaminopimelate decarboxylase |
|---|
| TIGRFAM ID | [TIGR01048] diaminopimelate decarboxylase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCCACACG ATCTGAATGA CCTTTCTCAT GCTCTGAACG CGCAAAGCCT GCGCGCGCTG
CCGGAGCGCT TCGGCTGCCC GCTGTGGGCC TACGATGCCG ACACCATCAT TGAGCGTATC
GGTCAACTGC GCCAGTTCGA TACCATTCGT TTCGCGCAGA AAGCTTGTTC CAACCTGCAT
ATTCTGGCGC TGATGCGTCA GCAGGGCGTG AAGGTGGATT CGGTCTCGCT TGGCGAAATC
GAACGTGCGC TGGCGGCCGG GTTTGAGCCC GGCACCGACG CGCACGAGAT TGTGTTTACC
GCCGATGTGC TGGACGACGC CACGCTGCAA CGGGTGCATG AGCTGAATAT TCCGGTGAAC
GCCGGCTCCA TCGACATGCT GCATCAACTG GGCGAGCGCT CGCCGGGTCA CCCGGTGTGG
CTGCGCATTA ATCCGGGGTT TGGTCACGGC CACAGCCAGA AGACCAACAC CGGCGGCGAA
AACAGTAAAC ACGGTATCTG GTATGCCGAT TTACCGCAGG CGCTGGAGGC GTTGAGCCGT
TACCGCCTGA AATTGATCGG CATCCATATG CATATCGGTT CCGGTGTGGA TTACCGGCAT
CTGGAGCAGG TATGCGATGC GATGGTGCAG CAGGTGCTGG CGGTGGGACA GGATCTGGAG
GCGATCTCCG CCGGCGGCGG GTTGTCGATT CCGTACCGCC ACGGTGGCGA GCGTATCGAT
ACCCAGCATT ATTATGGATT GTGGAACCGG GCGCGGGAGC AAATTGCCGG GCACTTGGGG
CACCCGGTGA CGCTGGAAAT CGAGCCAGGA CGTTTTCTGG TGGCGGAATC CGGCGTGCTG
GTGGCGCAGG TGCGCGTGGT GAAAGACATG GGCAGCCGCC ATTTTGTGTT GGTGGACGCG
GGTTTCAACG ACCTGATGCG CCCGGCGATG TACGGCAGCT ATCACCACAT TACGCTGCTG
CCGGGCGACG GGCGTGACCT GAGCCAGTCC GCGTTGCACG ATACGGTGGT GGCGGGGCCG
CTGTGTGAAT CCGGCGATGT GTTTACCCAG CAGGCGGGGG GCGGAGTGGA AACGCTGGCG
TTGCCGGCGG CGCAAGTGGG CGATTATCTG GTGTTCCATG ATACCGGTGC CTACGGTGCG
TCGATGTCGT CCAACTACAA CAGCCGTCCG CTGATCGCCG AAGTGCTGTT TGAACAAGGT
CAGCCGCGCT TGATCCGCCG TCGTCAGACG CTGGACGACC TGCTGGCGCT GGAGCGGGTG
TAA
|
|---|
| Protein sequence | MPHDLNDLSH ALNAQSLRAL PERFGCPLWA YDADTIIERI GQLRQFDTIR FAQKACSNLH
ILALMRQQGV KVDSVSLGEI ERALAAGFEP GTDAHEIVFT ADVLDDATLQ RVHELNIPVN
AGSIDMLHQL GERSPGHPVW LRINPGFGHG HSQKTNTGGE NSKHGIWYAD LPQALEALSR
YRLKLIGIHM HIGSGVDYRH LEQVCDAMVQ QVLAVGQDLE AISAGGGLSI PYRHGGERID
TQHYYGLWNR AREQIAGHLG HPVTLEIEPG RFLVAESGVL VAQVRVVKDM GSRHFVLVDA
GFNDLMRPAM YGSYHHITLL PGDGRDLSQS ALHDTVVAGP LCESGDVFTQ QAGGGVETLA
LPAAQVGDYL VFHDTGAYGA SMSSNYNSRP LIAEVLFEQG QPRLIRRRQT LDDLLALERV
|
|---|
| |