Gene Dd1591_0574 details

Gene Information

• Locus tag: Dd1591_0574
• ID: 8119857
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Dickeya zeae Ech1591
• Kingdom: Bacteria
• Replicon accession: NC_012912
• Strand: +
• Start bp: 656620
• End bp: 657168
• Gene Length: 549 bp
• Protein Length: 182 aa
• Translation table: 11
• GC content: 35%
• IMG OID: 644850963
• Product: type VI secretion system effector, Hcp1 family
• Protein accession: YP_003002935
• Protein GI: 251788214
• COG category: [S] Function unknown
• COG ID: [COG3157] Hemolysin-coregulated protein (uncharacterized)
• TIGRFAM ID: [TIGR03344] type VI secretion system effector, Hcp1 family

Plasmid Coverage information

• Num covering plasmid clones: 8
• Plasmid unclonability p-value: 0.237126
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGAGAATT TAATTATTAT CGTAGATGTG TATATCACTT GTTTATGTTT ATTAGGTAAA 
GGGATTTTTA TGGCTAATAT CATTTATCTG AAAATAGAAG GCAAAAACCA AGGGCTGATC 
TCTTCAGGGT GTGGCTCTTA TGACTCAATG GGGAACAAAT GGCAACAAGG TCATGAGAAT 
GAAATCTTTG TCTATGAGTT AAATAATGCG GCAGAGCGCA TCGATAATGT TGCATATCAA 
CCTGTTGAAA TTAGGAAGCC CATTGATAAA TCGACACCAT TATTATTGAG CGCATTAAAC 
GAAAATGAAT ACTTAACCTG TACCTTCATT TTCTACCGAA CCTCAGAGAA TGGAGGGATG 
GAGCAATATT TCTCAATAAA ATTGACCGAT GCAAAAGTAA AAAATATCAG AATGCACTAT 
CCCAGTTCAA TAACGCACAA TGAATATCAA CCAGAAGAGT TTATCTCTTT TACCTATAAA 
AACATGCTGT GCGAACATAT CAAAGCTGGA ACCAGTGCAT ATTGTATTTG GGAAAGTCAG 
TCGTTTTAA 

 

Protein sequence

MENLIIIVDV YITCLCLLGK GIFMANIIYL KIEGKNQGLI SSGCGSYDSM GNKWQQGHEN 
EIFVYELNNA AERIDNVAYQ PVEIRKPIDK STPLLLSALN ENEYLTCTFI FYRTSENGGM 
EQYFSIKLTD AKVKNIRMHY PSSITHNEYQ PEEFISFTYK NMLCEHIKAG TSAYCIWESQ 
SF