Gene Dd1591_0347 details

Gene Information

• Locus tag: Dd1591_0347
• Symbol: rpsD
• ID: 8116909
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Dickeya zeae Ech1591
• Kingdom: Bacteria
• Replicon accession: NC_012912
• Strand: +
• Start bp: 387427
• End bp: 388047
• Gene Length: 621 bp
• Protein Length: 206 aa
• Translation table: 11
• GC content: 50%
• IMG OID: 644850736
• Product: 30S ribosomal protein S4
• Protein accession: YP_003002716
• Protein GI: 251787995
• COG category: [J] Translation, ribosomal structure and biogenesis
• COG ID: [COG0522] Ribosomal protein S4 and related proteins
• TIGRFAM ID: [TIGR01017] ribosomal protein S4, bacterial/organelle type

Plasmid Coverage information

• Num covering plasmid clones: 6
• Plasmid unclonability p-value: 0.0772249
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGCAAGAT ATTTGGGTCC TAAGCTCAAG CTGAGCCGTC GTGAAGGCAC CGACCTGTTT 
CTAAAGTCTG GTGTTCGTGC GATCGATTCC AAGTGTAAAA TTGAACAAGC TCCTGGCCAG 
CACGGCGCAC GTAAACCGCG TCTGTCTGAC TATGGTGTAC AGTTGCGTGA GAAGCAGAAA 
GTTCGCCGTA TCTACGGTGT TCTGGAGCGT CAATTCCGTA ACTACTACAA AGAAGCCGCT 
CGCCTGAAAG GCAATACAGG TGCAAACCTG TTGCAGTTGC TGGAAGGTCG TTTGGACAAC 
GTTGTTTACC GTATGGGATT CGGTGCTACT CGCGCGGAAG CTCGTCAGCT GGTAAGTCAT 
AAAGCTGTCA TGGTAAACGG TCGCGTTGTT AACATCGCTT CTTATCAGGT ATCTCCGAAT 
GACGTAGTCA GCATCCGCGA GAAAGCGAAA AAGCAGTCTC GTGTTAAGGC CGCTCTGGAG 
CTGGCTGAAC AGCGTGAAAA GCCAACTTGG CTGGAAGTTG ATGCTGCCAA GATGGAAGGT 
GTGTTCAAGC GTATTCCTGA ACGTACCGAT CTGTCTGCGG ACATTAATGA ACACCTGATC 
GTCGAGCTTT ACTCCAAGTA A 

 

Protein sequence

MARYLGPKLK LSRREGTDLF LKSGVRAIDS KCKIEQAPGQ HGARKPRLSD YGVQLREKQK 
VRRIYGVLER QFRNYYKEAA RLKGNTGANL LQLLEGRLDN VVYRMGFGAT RAEARQLVSH 
KAVMVNGRVV NIASYQVSPN DVVSIREKAK KQSRVKAALE LAEQREKPTW LEVDAAKMEG 
VFKRIPERTD LSADINEHLI VELYSK