| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dd1591_0291 |
|---|
| Symbol | araD |
|---|
| ID | 8118613 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dickeya zeae Ech1591 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012912 |
|---|
| Strand | + |
|---|
| Start bp | 347639 |
|---|
| End bp | 348331 |
|---|
| Gene Length | 693 bp |
|---|
| Protein Length | 230 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 58% |
|---|
| IMG OID | 644850680 |
|---|
| Product | L-ribulose-5-phosphate 4-epimerase |
|---|
| Protein accession | YP_003002660 |
|---|
| Protein GI | 251787939 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG0235] Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases |
|---|
| TIGRFAM ID | [TIGR00760] L-ribulose-5-phosphate 4-epimerase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.0945287 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTATCAGC AACTGAAAGC TATCGTACTG GACGCCAACC TGCTGCTGCC GCGTCACGGT
TTAGTGACGC TGACCTGGGG CAATGTGTCG CAGATTGACC GCGAGCGGGG TGTTATCGCC
ATCAAACCCT CGGGGGTTTC CTACGAGCAG ATGACCATCG ACGATATCGT GGTGGTGGAT
ATGGATGGGC GAGTGGTGGA AGGACGCCTT AATCCCTCCA GCGATACCGC CACCCATCTG
GCGCTCTACA GCGCGTTCGG CAGTATCGGC GGTATTGTGC ACACCCATTC GCGCCACGGC
ACCATCTGGG CACAGGCCGG TCGGGATATT CCGGCGCTCG GCACCACCCA TGCCGATTAT
TTCTACGGTG ATATTCCCTG TACCCGCCCG TTGAGCGAGG GCGAAATAGC CGATGATTAT
GAAAAGAATA CCGGCCTGGT GATCGTGGAA GAATTTCAGC GCCGCGGTCT TGACCCGCTG
GCGGTGCCGG GCGCGGTGAT TACCGGCCAT GCGCCGTTCT GCTGGGGGGA AAATGCGCTG
GATGCGGTAC ATAATGCGCT GGTGCTTGAA GAAGTCGCCG CCATGGCGTT TTCGACCCGG
CTGCTTAATG CGGACATTCA TCTTGATCAG GCGCTTTCTG ACAAACACTA TTTCAGGAAA
CACGGTGCCA ATGCCTATTA CGGCCAGCGC TGA
|
|---|
| Protein sequence | MYQQLKAIVL DANLLLPRHG LVTLTWGNVS QIDRERGVIA IKPSGVSYEQ MTIDDIVVVD
MDGRVVEGRL NPSSDTATHL ALYSAFGSIG GIVHTHSRHG TIWAQAGRDI PALGTTHADY
FYGDIPCTRP LSEGEIADDY EKNTGLVIVE EFQRRGLDPL AVPGAVITGH APFCWGENAL
DAVHNALVLE EVAAMAFSTR LLNADIHLDQ ALSDKHYFRK HGANAYYGQR
|
|---|
| |