| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dd1591_0259 |
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| Symbol | hofQ |
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| ID | 8118581 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dickeya zeae Ech1591 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012912 |
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| Strand | + |
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| Start bp | 312270 |
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| End bp | 313571 |
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| Gene Length | 1302 bp |
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| Protein Length | 433 aa |
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| Translation table | 11 |
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| GC content | 55% |
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| IMG OID | 644850650 |
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| Product | putative outer membrane porin HofQ |
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| Protein accession | YP_003002630 |
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| Protein GI | 251787909 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG4796] Type II secretory pathway, component HofQ |
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| TIGRFAM ID | [TIGR02515] type IV pilus secretin (or competence protein) PilQ |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.0738011 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCAAACAG GACGTTTTCC CAACGGACGA TTCCGCCGCT ACGGCTGGCT GGTGATGTTA
TTTGGCAGCA TGTTGGCCGA AGCCAGCCGC GACGAGCCGG TTTCGCTGTC ATTTGATGAT
GTGCCGGTCC AGCGTGTATT GCAGGCGCTG GCGGACCATC AGCAGCTTAA TCTGGTCGTA
GCCCCTGGTG TGGCAGGCAA TGTTAGCCTG AATTTGCAAC AGGTTCCCTG GCAGCAGGCG
CTGGATATTA TTTTGCGTAT GGGGCAACTG ACGCTTGAAC GGCAGGACAG CGTCATGATG
GTTTACCCCG ATACGATGAT GAAAGACCGG CAGCAGAAAC AGGAAGAACT GGCGGCTAAA
CAACGCCAGC AACTGCCGTT GCAGAACGTG TCCGTCACTT TGCAGTACGC AGAGGCCGCC
GATGTGGTGG CCAATTTGCA AAGCCAGCGC GGTACGTTGC TGACGGAACG CGGCAACGTG
ACCGTAGACA AACGCACCAA TACCTTGTTG GTCCGGGATG TGGGTTCGGC GCTGGAGCAA
ATTCGTCCCT GGATTGAGGA ACTGGATAAG CCGTTATCAC AGGTACAACT GGCGGCGCAC
ATCGTTACCA TCAGTAGCGA GCATCTCAAG GCATTGGGCG TTAATTGGGG GCTGGGCGAT
GGCATGGCGA CGGGGCAAGC GCTGCAAATG AATAATTTTA ACGTCAGCTT GCCGATAGAA
TCGCCCGCCA TTAACGCCGG TTTTCATCTG GCAAAGTTGA ACGGACGACT GCTGGATCTG
GAATTGATGG CGCTGGAACA AGAAAACGAG GTGGAGATCA TTGCCAGTCC ACGTTTGTTT
ACTGCGCATC AGCAGACGGC CAGCATCAAA CAAGGTACGG AAATCCCATA TCAGGTATCC
AGCGGTGCGA GCGGTTCGAC ATCGATAGAG TTTAAAGAAG CGGTACTGGG CATGGAGGTC
ACGCCGCGGA TTCTGCATGG CGGGCAGATT ACGCTCAATC TGCTGATTAG CCAGAATATG
CCGGGGCGCG CCATTAAGCA GGGGGAAAAC GGGGAGATTC TGGCGATCGA CAAACAGGAG
ATCCAGACTC AGGTTACCGT TCAGGATGGC GAAACCATTG TGCTGGGCGG TATTTTCCAG
CAACAAAAAA ATCAGGCGGA ACGTCAGGTG CCGGGGTTAG GGGCGTTGCC TGGCATCGGT
GCGTGGTTCC GTAGCGGCAA CCGGCAGCAT ACCCGACGCG AACTGGTGAT CTTCATTACG
CCGACCTTGA TTCAGGCGGC TAAACGCAAG CCCGCAGCTT GA
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| Protein sequence | MQTGRFPNGR FRRYGWLVML FGSMLAEASR DEPVSLSFDD VPVQRVLQAL ADHQQLNLVV
APGVAGNVSL NLQQVPWQQA LDIILRMGQL TLERQDSVMM VYPDTMMKDR QQKQEELAAK
QRQQLPLQNV SVTLQYAEAA DVVANLQSQR GTLLTERGNV TVDKRTNTLL VRDVGSALEQ
IRPWIEELDK PLSQVQLAAH IVTISSEHLK ALGVNWGLGD GMATGQALQM NNFNVSLPIE
SPAINAGFHL AKLNGRLLDL ELMALEQENE VEIIASPRLF TAHQQTASIK QGTEIPYQVS
SGASGSTSIE FKEAVLGMEV TPRILHGGQI TLNLLISQNM PGRAIKQGEN GEILAIDKQE
IQTQVTVQDG ETIVLGGIFQ QQKNQAERQV PGLGALPGIG AWFRSGNRQH TRRELVIFIT
PTLIQAAKRK PAA
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