| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dd1591_0153 |
|---|
| Symbol | |
|---|
| ID | 8117111 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dickeya zeae Ech1591 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012912 |
|---|
| Strand | - |
|---|
| Start bp | 187322 |
|---|
| End bp | 189136 |
|---|
| Gene Length | 1815 bp |
|---|
| Protein Length | 604 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 54% |
|---|
| IMG OID | 644850541 |
|---|
| Product | glycoside hydrolase family 28 |
|---|
| Protein accession | YP_003002525 |
|---|
| Protein GI | 251787804 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG5434] Endopolygalacturonase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.90665 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGAAATCA TCATACTGCC ACGTCGTTTT GTTCTGGCAT CAATGGCGGC GCTATGTCTG
ATTGGCACGC CCATGCTGGC AGCGGCGTTT CCTGTGCCGC AAAAGCTCCA GATTCCTACG
CTGTCCTATG ACGATCATAG CGTGGTGTTG GTCTGGGATG CGCCGGAAAA CACAGAGGTT
ATAGCCGATT ACCAGATTTA TCAGAACGAC CAGCTTATCG GCCTTGCCAG CAAGAATAAC
GACATAAATT CCCCGGCCAA GCCCTATATC AACGCGTTCT ATAAAAACGA TACCGGTAAT
TTTCACCACC GGGTAATCAT GCAGAATGCA AAAGTGAGTG GGCTGAAAGC CAGCACCGAA
TACGCGTTCA CCGTGCGCGC GGTCTATGCT GACGGCAGCA TCTCCGCTAA CAGCAATACC
GTCACCGTGA CCACCACCGC CGCGCCGCCG GTGATCAACA TCACCCAGTA CGGCGCCAAA
GGCGACGGCA CCACGCTCAA TACCGCTGCG ATTCAAAAGG CCATTGACGC CTGTCAGATT
GGCTGCCGGG TCGACATTCC GCCTGGCGTC TTCAAAATCG GTGCGCTGTG GCTGAAAAGC
GACATGACGC TGAATCTGTT ACAAGGTGCA ACGTTGCTTG GCTCCGACAA ACCGTCGGAT
TATCCCGACA CTTACAGCAA TAATGCTTAC TCATCCCTGT CGCGCCCGGC GTCGCTTATC
AACGCGATTG ACAAAAACCA CGCCAGCGGC GGCAAGCTCA AGAATATCCG CATCACCGGC
AAAGGTATCA TTGACGGCAA CGGCTGGAAG CGTAGCGCTA ATGTCAACGA TGAACTCGGC
AACGGCCTGC CGCAGTATGT GAAGAGTGAT AGCGACAGAG TCAGTCTGGA CGGAATTTTG
GCGAAAAATC AGGTGGAGGC CGCCGTCGCC AGCGGCGTAA ACATTAAAAC CGCCTACAAT
CAGCGTCGCT CCAGCCTGAT CAGCCTGAGC AACGTACAGA ACGTCTACAT CGCCGACGTT
ACCATCCGCA ATCCCGCCAA CCACGGCGTC ATGATCCTGG AAAACAGCAA TGTGGTGGAA
AACGGCGTCA CCCATCAGAC GTTCAACACC AACAATGGCG ATGGTGTGGA ATTCGGCAGC
AGCCAGAACA TCATGGTATT CAACAGCGTG TTTGATACCG GAGACGACTG CATCAATTTT
GCCTCCGGTA TGGGCCAGCA GGCCCAGAGT CAGGCGCCGG TTAAGAATGT CTGGCTGTTC
AACAACTACT TCCGTCACGG TCACGGTGCG GTAGTGTTAG GTAGCCATAC CGGGGCAGGC
ATTATCGGCA TACAGGCGGA AAACAGCGTG ATGAGTCAAA CCGATATCGG CTTGCGCGCC
AAGAGCGCAC CCGATATCGG CGGCGGCGCA CACGACATCA TCTTTCGCAA CAACGCGATG
AAGAACCTGG CGAGACAAGC CGTGATGGTA ACCCTGAATT ACGTAGACAA CACCGGCACA
ATCAATTATA CGCCGGCTCG TATTCCCGCT CGTTTTTATA ATTTTACCGT CAAAAATGTC
ACGGTGCAGG ACAGCACTGG CAAGAATCCA TCGATTGAAA TCGTGGGCGA CAGCAGCAAG
AACATCTGGC ACAGCCAGTT GAATTTCAGC GACATGAAAC TCAGCGGCGT GATGCCGACG
TCAATCAGCG ACCTGAGCGA CAGCCAGTTC AACAATCTGG TATTCAGCAA CCTGCGTAGC
GGCACCTCAC CGTGGAATTT CGGCACAGTG AGAAATGTCA CGGTGAATGG ACAAACCGTG
CCTGCCGCCT TCTGA
|
|---|
| Protein sequence | MEIIILPRRF VLASMAALCL IGTPMLAAAF PVPQKLQIPT LSYDDHSVVL VWDAPENTEV
IADYQIYQND QLIGLASKNN DINSPAKPYI NAFYKNDTGN FHHRVIMQNA KVSGLKASTE
YAFTVRAVYA DGSISANSNT VTVTTTAAPP VINITQYGAK GDGTTLNTAA IQKAIDACQI
GCRVDIPPGV FKIGALWLKS DMTLNLLQGA TLLGSDKPSD YPDTYSNNAY SSLSRPASLI
NAIDKNHASG GKLKNIRITG KGIIDGNGWK RSANVNDELG NGLPQYVKSD SDRVSLDGIL
AKNQVEAAVA SGVNIKTAYN QRRSSLISLS NVQNVYIADV TIRNPANHGV MILENSNVVE
NGVTHQTFNT NNGDGVEFGS SQNIMVFNSV FDTGDDCINF ASGMGQQAQS QAPVKNVWLF
NNYFRHGHGA VVLGSHTGAG IIGIQAENSV MSQTDIGLRA KSAPDIGGGA HDIIFRNNAM
KNLARQAVMV TLNYVDNTGT INYTPARIPA RFYNFTVKNV TVQDSTGKNP SIEIVGDSSK
NIWHSQLNFS DMKLSGVMPT SISDLSDSQF NNLVFSNLRS GTSPWNFGTV RNVTVNGQTV
PAAF
|
|---|
| |