| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | B21_03954 |
|---|
| Symbol | fumB |
|---|
| ID | 8115762 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Escherichia coli BL21 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012892 |
|---|
| Strand | - |
|---|
| Start bp | 4250850 |
|---|
| End bp | 4252496 |
|---|
| Gene Length | 1647 bp |
|---|
| Protein Length | 548 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 54% |
|---|
| IMG OID | 644850107 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_003001680 |
|---|
| Protein GI | 251787376 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG1951] Tartrate dehydratase alpha subunit/Fumarate hydratase class I, N-terminal domain |
|---|
| TIGRFAM ID | [TIGR00722] hydro-lyases, Fe-S type, tartrate/fumarate subfamily, alpha region
[TIGR00723] hydro-lyases, Fe-S type, tartrate/fumarate subfamily, beta region |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTCAAACA AACCCTTTAT CTACCAGGCA CCTTTCCCGA TGGGGAAAGA CAATACCGAA
TACTATCTAC TCACTTCCGA TTACGTTAGC GTTGCCGACT TCGACGGCGA AACCATCCTG
AAAGTGGAAC CAGAAGCCCT GACCCTGCTG GCGCAGCAAG CCTTTCACGA CGCTTCTTTT
ATGCTCCGTC CGGCACACCA GAAACAGGTT GCGGCTATTC TTCACGATCC AGAAGCCAGC
GAAAACGACA AGTACGTGGC GCTGCAATTC TTAAGAAACT CCGAAATCGC CGCCAAAGGC
GTGCTGCCGA CCTGCCAGGA TACCGGCACC GCGATCATCG TCGGTAAAAA AGGCCAGCGC
GTGTGGACCG GTGGCGGTGA TGAAGAAGCG CTGTCGAAAG GCGTCTATAA CACCTATATC
GAAGATAACC TGCGCTATTC ACAAAACGCG GCGCTGGACA TGTACAAAGA GGTCAACACC
GGCACTAACC TGCCTGCGCA AATCGACCTG TACGCGGTAG ATGGCGATGA GTACAAATTC
CTTTGCGTTG CGAAAGGCGG CGGCTCTGCC AACAAAACCT ATCTCTACCA GGAAACCAAA
GCCCTGCTGA CTCCCGGCAA ACTGAAAAAC TTCCTCGTTG AGAAAATGCG TACCCTCGGT
ACTGCAGCCT GCCCGCCGTA CCATATCGCG TTTGTGATTG GCGGTACGTC TGCAGAAACC
AACCTGAAAA CCGTCAAGTT AGCAAGCGCT CACTATTACG ATGAACTGCC GACGGAAGGG
AACGAACATG GTCAGGCGTT CCGCGATGTC CAGCTGGAAC AGGAACTGCT GGAAGAGGCC
CAGAAACTCG GTCTTGGCGC GCAGTTTGGC GGTAAATACT TCGCGCACGA CATTCGCGTT
ATCCGTCTGC CACGTCACGG CGCATCCTGC CCGGTAGGCA TGGGCGTCTC CTGCTCCGCT
GACCGTAACA TCAAAGCGAA AATCAACCGC GAAGGTATCT GGATCGAAAA ACTGGAACAC
AATCCAGACC AGTACATTCC ACAAGAACTG CGTCAGGCCG GTGAAGGCGA AGCGGTGAAG
GTCGACCTTA ACCGCCCGAT GAAAGAGATC CTCGCCCAGC TTTCGCAATA TCCGGTTTCC
ACTCGTTTGT CGCTCACCGG CACCATTATT GTGGGTCGAG ATATTGCACA CGCCAAGCTG
AAAGAGCTGA TTGACGCCGG TAAAGAACTT CCGCAGTACA TCAAAGATCA CCCGATCTAC
TACGCGGGTC CGGCGAAAAC CCCTGCCGGT TATCCATCAG GTTCACTTGG CCCAACCACC
GCAGGCCGTA TGGACTCCTA CGTGGATCTG CTGCAATCCC ACGGCGGCAG CATGATCATG
CTGGCGAAAG GTAACCGCAG TCAGCAGGTT ACCGACGCGT GCCATAAACA CGGCGGCTTC
TACCTCGGTA GTATCGGCGG TCCGGCGGCG GTACTGGCGC AGCAGAGCAT CAAGCATCTG
GAATGCGTCG CTTATCCGGA GCTGGGTATG GAAGCTATCT GGAAAATCGA AGTAGAAGAT
TTCCCGGCGT TTATCCTGGT CGATGACAAA GGTAACGACT TCTTCCAGCA GATCGTCAAC
AAACAGTGCG CGAACTGCAC TAAGTAA
|
|---|
| Protein sequence | MSNKPFIYQA PFPMGKDNTE YYLLTSDYVS VADFDGETIL KVEPEALTLL AQQAFHDASF
MLRPAHQKQV AAILHDPEAS ENDKYVALQF LRNSEIAAKG VLPTCQDTGT AIIVGKKGQR
VWTGGGDEEA LSKGVYNTYI EDNLRYSQNA ALDMYKEVNT GTNLPAQIDL YAVDGDEYKF
LCVAKGGGSA NKTYLYQETK ALLTPGKLKN FLVEKMRTLG TAACPPYHIA FVIGGTSAET
NLKTVKLASA HYYDELPTEG NEHGQAFRDV QLEQELLEEA QKLGLGAQFG GKYFAHDIRV
IRLPRHGASC PVGMGVSCSA DRNIKAKINR EGIWIEKLEH NPDQYIPQEL RQAGEGEAVK
VDLNRPMKEI LAQLSQYPVS TRLSLTGTII VGRDIAHAKL KELIDAGKEL PQYIKDHPIY
YAGPAKTPAG YPSGSLGPTT AGRMDSYVDL LQSHGGSMIM LAKGNRSQQV TDACHKHGGF
YLGSIGGPAA VLAQQSIKHL ECVAYPELGM EAIWKIEVED FPAFILVDDK GNDFFQQIVN
KQCANCTK
|
|---|
| |