| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | B21_02579 |
|---|
| Symbol | ygcS |
|---|
| ID | 8113975 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Escherichia coli BL21 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012892 |
|---|
| Strand | - |
|---|
| Start bp | 2727904 |
|---|
| End bp | 2729241 |
|---|
| Gene Length | 1338 bp |
|---|
| Protein Length | 445 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 53% |
|---|
| IMG OID | 644848777 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_003000350 |
|---|
| Protein GI | 251786046 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG2814] Arabinose efflux permease |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 25 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAACACTT CACCGGTGCG AATGGATGAT TTACCGCTTA ACCGTTTTCA CTGCCGCATT
GCTGCGCTCA CTTTCGGCGC ACACCTGACC GACGGTTATG TTCTCGGCGT CATTGGTTAC
GCCATTATTC AGCTTACGCC CGCCATGCAA CTGACGCCGT TTATGGCGGG AATGATCGGC
GGCTCGGCGC TCCTTGGTTT GTTCCTTGGC AGCCTGGTTC TTGGGTGGAT CTCCGACCAT
ATTGGTCGGC AAAAAATCTT CACCTTCAGC TTTTTGCTGA TTACGCTTGC TTCGTTTTTA
CAATTTTTTG CCACCACGCC AGAGCATCTT ATTGGACTGC GCATTTTGAT TGGCATTGGT
CTGGGAGGCG ATTATTCAGT AGGTCACACC TTGCTGGCTG AATTTTCCCC GCGCCGCCAT
CGCGGTATTT TGCTGGGCGC ATTCAGCGTG GTGTGGACCG TAGGCTATGT GCTGGCAAGT
ATTGCCGGAC ATCACTTTAT TTCCGAAAAC CCGGAGGCCT GGCGCTGGCT ACTGGCATCG
GCAGCTCTGC CCGCGTTGTT GATTACGTTA TTACGCTGGG GAACGCCAGA ATCACCACGC
TGGCTACTGC GCCAGGGGCG TTTTGCAGAA GCTCACGCTA TCGTGCATCG CTATTTTGGT
CCCCATGTTT TACTGGGCGA TGAAGTGGTA ACGGCGACCC ATAAACACAT CAAAACCTTG
TTCTCTTCGC GTTACTGGCG GCGCACGGCG TTTAACAGCG TCTTCTTTGT CTGCCTCGTA
ATCCCATGGT TTGTGATTTA TACCTGGCTG CCAACTATCG CCCAGACTAT TGGTCTGGAA
GATGCGCTGA CTGCCAGCCT GATGCTTAAT GCGTTGTTAA TTGTGGGCGC GCTGCTGGGA
TTAGTTCTGA CGCACCTGCT GGCACATCGC AAATTTTTGC TGGGAAGTTT TTTGCTGCTG
GCGGCAACGC TGGTAGTCAT GGCCTGTTTG CCTTCCGGCA GTTCATTAAC GCTGCTGCTT
TTTGTTCTCT TCAGCACCAC CATTTCGGCA GTCAGTAATC TGGTGGGCAT TTTGCCTGCG
GAAAGTTTTC CTACTGACAT TCGCTCGCTG GGCGTCGGTT TTGCCACTGC CATGAGTCGA
CTTGGCGCGG CGGTAAGTAC TGGCCTGCTG CCGTGGGTGC TGGCGCAGTG GGGAATGCAA
GTCACCTTAT TGCTCCTGGC GACAGTGTTG TTGGTTGGTT TTGTTGTGAC CTGGCTATGG
GCACCAGAAA CTAAAGCCCT CCCGCTGGTG GCGGCGGGAA ATGTAGGAGG TGCGAATGAA
CATTCTGTTA GCGTTTAA
|
|---|
| Protein sequence | MNTSPVRMDD LPLNRFHCRI AALTFGAHLT DGYVLGVIGY AIIQLTPAMQ LTPFMAGMIG
GSALLGLFLG SLVLGWISDH IGRQKIFTFS FLLITLASFL QFFATTPEHL IGLRILIGIG
LGGDYSVGHT LLAEFSPRRH RGILLGAFSV VWTVGYVLAS IAGHHFISEN PEAWRWLLAS
AALPALLITL LRWGTPESPR WLLRQGRFAE AHAIVHRYFG PHVLLGDEVV TATHKHIKTL
FSSRYWRRTA FNSVFFVCLV IPWFVIYTWL PTIAQTIGLE DALTASLMLN ALLIVGALLG
LVLTHLLAHR KFLLGSFLLL AATLVVMACL PSGSSLTLLL FVLFSTTISA VSNLVGILPA
ESFPTDIRSL GVGFATAMSR LGAAVSTGLL PWVLAQWGMQ VTLLLLATVL LVGFVVTWLW
APETKALPLV AAGNVGGANE HSVSV
|
|---|
| |