| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | B21_02244 |
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| Symbol | yfdU |
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| ID | 8114120 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Escherichia coli BL21 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012892 |
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| Strand | - |
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| Start bp | 2367454 |
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| End bp | 2369148 |
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| Gene Length | 1695 bp |
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| Protein Length | 564 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 644848449 |
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| Product | hypothetical protein |
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| Protein accession | YP_003000022 |
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| Protein GI | 251785718 |
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| COG category | [E] Amino acid transport and metabolism
[H] Coenzyme transport and metabolism |
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| COG ID | [COG0028] Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] |
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| TIGRFAM ID | [TIGR03254] oxalyl-CoA decarboxylase |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTCAGATC AACTTCAAAT GACAGATGGT ATGCATATCA TCGTTGAAGC ATTAAAACAG
AATAATATTG ACACTATTTA TGGTGTTGTA GGTATTCCTG TGACGGATAT GGCACGCCAT
GCCCAGGCGG AAGGCATTCG TTATATTGGT TTTCGTCATG AGCAGTCGGC AGGCTATGCC
GCTGCGGCAA GCGGTTTTCT TACCCAAAAA CCGGGGATCT GCCTGACAGT TTCTGCGCCA
GGATTCCTCA ATGGTTTGAC CGCATTGGCC AACGCAACGG TAAATGGTTT TCCGATGATC
ATGATTAGCG GCTCCAGCGA CCGCGCGATC GTCGACCTAC AGCAAGGTGA TTATGAAGAG
CTGGACCAAA TGAATGCGGC AAAACCGTAT GCCAAAGCAG CATTTCGCGT TAATCAGCCG
CAGGATCTTG GCATTGCATT GGCACGCGCT ATCCGGGTCT CTGTATCGGG TCGCCCTGGC
GGAGTTTATC TTGATTTGCC AGCAAATGTC CTGGCCGCGA CGATGGAAAA AGACGAAGCG
TTAACCACGA TTGTTAAAGT TGAAAATCCG TCGCCAGCAT TATTGCCATG CCCGAAGTCA
GTCACTAGCG CAATTTCGCT TTTAGCAAAA GCTGAACGGC CATTAATTAT CCTTGGCAAA
GGCGCGGCGT ATTCACAAGC TGATGAACAG CTTCGTGAAT TTATTGAAAG TGCTCAGATT
CCATTCCTGC CAATGTCTAT GGCGAAAGGG ATCCTTGAAG ATACGCATCC ACTTTCTGCG
GCAGCTGCGC GTTCGTTTGC CCTGGCAAAT GCTGACGTTG TCATGCTTGT TGGTGCACGA
CTGAATTGGT TATTGGCACA CGGTAAAAAA GGATGGGCGG CAGATACACA GTTTATTCAA
CTGGATATTG AACCGCAGGA AATTGACAGC AACCGCCCCA TTGCTGTGCC AGTCGTTGGT
GATATTGCAT CCAGTATGCA AGGTATGCTG GCAGAACTGA AACAAAACAC ATTTACGACT
CCACTGGTAT GGCGCGATAT TTTAAATATC CACAAGCAGC AAAATGCACA AAAAATGCAT
GAAAAATTAA GTACAGATAC TCAACCATTA AATTACTTTA ATGCATTAAG TGCTGTGCGC
GACGTATTGC GCGAGAACCA GGATATTTAT TTAGTTAATG AAGGTGCAAA TACCCTGGAT
AATGCACGAA ATATTATTGA TATGTATAAA CCACGTCGTC GTCTGGATTG TGGTACCTGG
GGTGTCATGG GCATCGGTAT GGGCTATGCC ATCGGTGCTA GCGTGACTTC TGGTTCTCCG
GTTGTCGCCA TTGAAGGTGA TAGTGCTTTT GGTTTCAGTG GGATGGAAAT TGAAACGATT
TGTCGATATA ACCTGCCGGT GACGATCGTT ATTTTTAATA ATGGCGGCAT CTACAGAGGA
GACGGTGTTG ATCTCAGTGG CGCTGGTGCA CCATCACCAA CGGATCTGTT GCACCATGCA
AGGTATGACA AATTAATGGA TGCGTTTCGT GGCGTTGGCT ATAACGTCAC CACGACAGAT
GAACTTCGTC ATGCTTTAAC CACCGGTATT CAGTCGCGCA AACCGACCAT TATTAATGTG
GTCATCGACC CTGCAGCAGG AACTGAAAGT GGCCATATTA CCAAACTTAA CCCAAAACAA
GTCGCTGGTA ATTAA
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| Protein sequence | MSDQLQMTDG MHIIVEALKQ NNIDTIYGVV GIPVTDMARH AQAEGIRYIG FRHEQSAGYA
AAASGFLTQK PGICLTVSAP GFLNGLTALA NATVNGFPMI MISGSSDRAI VDLQQGDYEE
LDQMNAAKPY AKAAFRVNQP QDLGIALARA IRVSVSGRPG GVYLDLPANV LAATMEKDEA
LTTIVKVENP SPALLPCPKS VTSAISLLAK AERPLIILGK GAAYSQADEQ LREFIESAQI
PFLPMSMAKG ILEDTHPLSA AAARSFALAN ADVVMLVGAR LNWLLAHGKK GWAADTQFIQ
LDIEPQEIDS NRPIAVPVVG DIASSMQGML AELKQNTFTT PLVWRDILNI HKQQNAQKMH
EKLSTDTQPL NYFNALSAVR DVLRENQDIY LVNEGANTLD NARNIIDMYK PRRRLDCGTW
GVMGIGMGYA IGASVTSGSP VVAIEGDSAF GFSGMEIETI CRYNLPVTIV IFNNGGIYRG
DGVDLSGAGA PSPTDLLHHA RYDKLMDAFR GVGYNVTTTD ELRHALTTGI QSRKPTIINV
VIDPAAGTES GHITKLNPKQ VAGN
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