| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | B21_01505 |
|---|
| Symbol | ydeH |
|---|
| ID | 8114888 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Escherichia coli BL21 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012892 |
|---|
| Strand | - |
|---|
| Start bp | 1571667 |
|---|
| End bp | 1572557 |
|---|
| Gene Length | 891 bp |
|---|
| Protein Length | 296 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 644847739 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_002999312 |
|---|
| Protein GI | 251785008 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG2199] FOG: GGDEF domain |
|---|
| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 4 |
|---|
| Plasmid unclonability p-value | 0.00205706 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGATCAAGA AGACAACGGA AATTGATGCC ATCTTGTTAA ATCTCAATAA GGCTATCGAT
GCCCACTACC AGTGGCTGGT GAGTATGTTT CACAGCGTGG TCGCGAGAGA TGCCAGTAAG
CCAGAAATAA CGGATAACCA TTCTTATGGA CTGTGCCAGT TTGGTCGGTG GATTGATCAT
CTGGGGCCAC TCGATAACGA TGAATTACCT TACGTTCGGC TAATGGATTC TGCCCATCAA
CATATGCATA ACTGTGGTCG GGAATTAATG CTGGCTATTG TTGAAAATCA CTGGCAGGAC
GCGCATTTCG CCGCTTTTCA GGAACGGTTA CTTTCTTTTA CTGCGGCATT AACCGATTAC
AAAATTTATT TGCTGACGAT CCGTAGCAAT ATGGATGTTT TGACGGGATT GCCGGGGCGT
CGGGTTCTTG ATGAATCCTT TGATCATCAG TTACGCAACG CTGAGCCTCT GAATCTTTAT
TTAATGTTGT TGGATATTGA CCGATTTAAA TTGGTTAATG ATACCTACGG GCATTTAACC
GGCGATGTAG TATTACGCAC CCTGGCAACT TACTTAGCCA GTTGGACGCG TGATTACGAA
ACGGTTTATC GCTACGGGGG CGAAGAATTT ATCATTATTG TTAAAGCGGC TAATGATGAA
GACGCATGTC GTGCAGGTGT CAGAATTTGC CAGTTAGTCG ATAACCATGC CATCACACAT
TCTGAAGGGC ATATCAACAT TACCGTGACA GCAGGTGTCA GTCGCGCATT TCCTGAAGAG
CCTCTGGATG TGGTCATTGG AAGAGCAGAC CGGGCAATGT ATGAGGGTAA GCAAACCGGA
AGAAATCGCT GCATGTTTAT TGACGAACAA AATGTGATTA ACCGAGTTTA A
|
|---|
| Protein sequence | MIKKTTEIDA ILLNLNKAID AHYQWLVSMF HSVVARDASK PEITDNHSYG LCQFGRWIDH
LGPLDNDELP YVRLMDSAHQ HMHNCGRELM LAIVENHWQD AHFAAFQERL LSFTAALTDY
KIYLLTIRSN MDVLTGLPGR RVLDESFDHQ LRNAEPLNLY LMLLDIDRFK LVNDTYGHLT
GDVVLRTLAT YLASWTRDYE TVYRYGGEEF IIIVKAANDE DACRAGVRIC QLVDNHAITH
SEGHINITVT AGVSRAFPEE PLDVVIGRAD RAMYEGKQTG RNRCMFIDEQ NVINRV
|
|---|
| |