| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | B21_00953 |
|---|
| Symbol | ycbU |
|---|
| ID | 8116200 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Escherichia coli BL21 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012892 |
|---|
| Strand | + |
|---|
| Start bp | 1007388 |
|---|
| End bp | 1007930 |
|---|
| Gene Length | 543 bp |
|---|
| Protein Length | 180 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 644847215 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_002998788 |
|---|
| Protein GI | 251784484 |
|---|
| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG3539] P pilus assembly protein, pilin FimA |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.116375 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAGAAAA AAACGATATT TCAGTGCGTT ATCTTGTTCT TTAGCATTCT TAACATCCAT
GTCGGGATGG CTGGGCCTGA ACAAGTTAGT ATGCATATTT ATGGGAATGT GGTCGATCAG
GGCTGTGATG TCGCCACCAA AAGTGCATTA CAAAATATTC ATATTGGTGA TTTTAATATC
AGTGATTTTC AGGCCGCGAA TACCGTAAGC ACTGCTGCTG ATTTGAATAT CGATATCACC
GGTTGTGCCG CTGGTATTAC TGGCGCGGAC GTCCTTTTTA GCGGCGAGGC TGACACCCTT
GCGCCGACAC TGCTCAAACT AACTGACACA GGCGGAAGCG GTGGTATGGC AACGGGGATT
GCCGTGCAAA TTCTTGATGC GCAAAGTCAG CAAGAAATCC CGCTCAATCA GGTCCAGCCT
CTTACGCCCT TAAAAGCCGG GGATAACACA CTCAAATATC AACTTCGTTA TAAGTCCACA
AAGGCGGGAG CAACGGGCGG TAATGCGACG GCGGTTCTCT ATTTTGATCT GGTTTACCAG
TGA
|
|---|
| Protein sequence | MKKKTIFQCV ILFFSILNIH VGMAGPEQVS MHIYGNVVDQ GCDVATKSAL QNIHIGDFNI
SDFQAANTVS TAADLNIDIT GCAAGITGAD VLFSGEADTL APTLLKLTDT GGSGGMATGI
AVQILDAQSQ QEIPLNQVQP LTPLKAGDNT LKYQLRYKST KAGATGGNAT AVLYFDLVYQ
|
|---|
| |