| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | B21_00122 |
|---|
| Symbol | gcd |
|---|
| ID | 8113360 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Escherichia coli BL21 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012892 |
|---|
| Strand | - |
|---|
| Start bp | 141640 |
|---|
| End bp | 144030 |
|---|
| Gene Length | 2391 bp |
|---|
| Protein Length | 796 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 55% |
|---|
| IMG OID | 644846415 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_002997988 |
|---|
| Protein GI | 251783684 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG4993] Glucose dehydrogenase |
|---|
| TIGRFAM ID | [TIGR03074] membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.793225 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCAATTA ACAATACAGG CTCGCGACGA TTACTCGTCA CGCTAACAGC CCTTTTTGCA
GCGCTTTGCG GGCTGTATCT ACTCATTGGC GGAGGCTGGC TGGTCGCGAT TGGCGGCTCC
TGGTACTACC CTATCGCTGG CCTTGTGATG CTCGGCGTCG CCTGGATGCT GTGGCGCAGT
AAACGTGCCG CGCTTTGGCT ATACGCCGCC CTGCTGCTCG GCACCATGAT TTGGGGCGTC
TGGGAAGTTG GTTTCGACTT CTGGGCGCTG ACTCCGCGCA GCGATATTCT GGTCTTCTTC
GGCATCTGGC TGATCCTGCC GTTTGTCTGG CGTCGCCTGG TCATTCCTGC CAGCGGCGCA
GTTGCCGCAC TGGTGGTGGC ACTGCTGATT AGCGGTAGTA TCCTGACCTG GGCCGGATTT
AACGATCCGC AGGAAATCAA CGGCACCTTA AGCGCCGATG CCACACCTGC GGAAGCTATC
TCACCCGTTG CCGATCAGGA CTGGCCTGCC TATGGTCGCA ATCAGGAAGG TCAACGCTTT
TCACCTCTGA AACAAATTAA CGCCGATAAC GTCCATAATC TGAAAGAAGC CTGGGTGTTC
CGTACTGGCG ATGTGAAGCA GCCGAACGAT CCGGGCGAAA TCACCAATGA AGTGACGCCG
ATTAAAGTGG GCGACACCCT TTACCTGTGT ACCGCTCACC AGCGCCTGTT TGCGCTCGAT
GCCGCCAGCG GCAAAGAGAA ATGGCATTAC GATCCTGAGC TGAAAACTAA CGAGTCTTTC
CAGCACGTAA CCTGCCGTGG CGTCTCTTAT CATGAAGCCA AAGCAGAAAC GGCTTCGCCG
GAAGTGATGG CGGATTGCCC GCGTCGTATC ATTCTTCCGG TCAATGATGG TCGACTGATT
GCGATTAACG CTGAAAACGG CAAACTGTGC GAAACCTTCG CCAATAAAGG CGTGCTCAAT
CTGCAAAGCA ATATGCCAGA CACCAAACCG GGTCTGTATG AACCGACTTC GCCACCGATT
ATCACCGATA AAACCATCGT GATGGCAGGT TCAGTTACCG ATAACTTCTC AACCCGCGAA
ACGTCTGGCG TGATCCGTGG TTTTGATGTC AACACCGGGG AGCTGCTGTG GGCTTTTGAT
CCCGGCGCGA AAGATCCGAA CGCAATCCCG TCTGACGAAC ACACCTTTAC CTTTAACTCG
CCAAACTCGT GGGCACCAGC GGCCTATGAC GCGAAGCTGG ATCTGGTGTA TCTGCCGATG
GGCGTGACCA CGCCGGATAT CTGGGGCGGT AACCGCACAC CGGAACAGGA ACGTTATGCC
AGCTCGATTC TGGCGCTGAA TGCCACTACC GGGAAACTGG CGTGGAGCTA CCAGACCGTT
CACCACGACC TGTGGGATAT GGATCTTCCG GCACAGCCGA CGCTGGCGGA CATCACCGTT
AATGGTCAGA AAGTGCCAGT TATTTACGCT CCGGCGAAAA CCGGCAACAT TTTTGTGCTC
GATCGTCGTA ATGGCGAACT GGTGGTTCCG GCACCGGAAA AACCGGTTCC CCAAGGTGCT
GCCAAAGGCG ATTACGTTAC CCCTACTCAA CCATTCTCGG AACTGAGCTT CCGTCCGACG
AAAGATTTGA GCGGTGCGGA TATGTGGGGA GCCACCATGT TTGACCAACT GGTGTGCCGC
GTGATGTTCC ACCAGATGCG CTATGAAGGC ATTTTCACCC CGCCATCTGA ACAGGGTACG
CTGGTCTTCC CGGGTAACCT GGGGATGTTC GAATGGGGCG GGATTTCCGT TGATCCAAAT
CGTGAAGTGG CGATTGCCAA CCCAATGGCA CTGCCGTTTG TTTCGAAACT GATCCCGCGT
GGTCCTGGCA ACCCGATGGA GCAGCCGAAA GATGCCAAAG GCACGGGTAC GGAATCCGGC
ATTCAGCCAC AGTACGGTGT ACCGTATGGT GTCACGCTCA ACCCGTTCCT CTCACCATTT
GGTCTGCCAT GTAAACAGCC AGCATGGGGT TATATCTCGG CGCTGGATCT GAAAACTAAT
GAAGTGGTGT GGAAGAAACG TATTGGTACG CCGCAGGACA GTATGCCGTT CCCGATGCCG
GTTCCGGTGC CGTTCAATAT GGGTATGCCG ATGCTGGGCG GGCCAATCTC CACGGCGGGT
AACGTGCTGT TTATCGCCGC TACGGCAGAT AACTACCTGC GCGCTTACAA CATGAGCAAC
GGTGAAAAAC TGTGGCAGGG TCGTTTACCA GCGGGTGGTC AGGCTACGCC AATGACCTAT
GAAGTGAATG GTAAGCAGTA TGTGGTGATC TCCGCAGGCG GTCACGGTTC ATTTGGTACG
AAGATGGGCG ACTATATTGT GGCTTATGCG CTGCCGGATG ATGTGAAGTA A
|
|---|
| Protein sequence | MAINNTGSRR LLVTLTALFA ALCGLYLLIG GGWLVAIGGS WYYPIAGLVM LGVAWMLWRS
KRAALWLYAA LLLGTMIWGV WEVGFDFWAL TPRSDILVFF GIWLILPFVW RRLVIPASGA
VAALVVALLI SGSILTWAGF NDPQEINGTL SADATPAEAI SPVADQDWPA YGRNQEGQRF
SPLKQINADN VHNLKEAWVF RTGDVKQPND PGEITNEVTP IKVGDTLYLC TAHQRLFALD
AASGKEKWHY DPELKTNESF QHVTCRGVSY HEAKAETASP EVMADCPRRI ILPVNDGRLI
AINAENGKLC ETFANKGVLN LQSNMPDTKP GLYEPTSPPI ITDKTIVMAG SVTDNFSTRE
TSGVIRGFDV NTGELLWAFD PGAKDPNAIP SDEHTFTFNS PNSWAPAAYD AKLDLVYLPM
GVTTPDIWGG NRTPEQERYA SSILALNATT GKLAWSYQTV HHDLWDMDLP AQPTLADITV
NGQKVPVIYA PAKTGNIFVL DRRNGELVVP APEKPVPQGA AKGDYVTPTQ PFSELSFRPT
KDLSGADMWG ATMFDQLVCR VMFHQMRYEG IFTPPSEQGT LVFPGNLGMF EWGGISVDPN
REVAIANPMA LPFVSKLIPR GPGNPMEQPK DAKGTGTESG IQPQYGVPYG VTLNPFLSPF
GLPCKQPAWG YISALDLKTN EVVWKKRIGT PQDSMPFPMP VPVPFNMGMP MLGGPISTAG
NVLFIAATAD NYLRAYNMSN GEKLWQGRLP AGGQATPMTY EVNGKQYVVI SAGGHGSFGT
KMGDYIVAYA LPDDVK
|
|---|
| |