| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | B21_00106 |
|---|
| Symbol | ppdD |
|---|
| ID | 8116351 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Escherichia coli BL21 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012892 |
|---|
| Strand | - |
|---|
| Start bp | 119914 |
|---|
| End bp | 120354 |
|---|
| Gene Length | 441 bp |
|---|
| Protein Length | 146 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 53% |
|---|
| IMG OID | 644846400 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_002997973 |
|---|
| Protein GI | 251783669 |
|---|
| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG4969] Tfp pilus assembly protein, major pilin PilA |
|---|
| TIGRFAM ID | [TIGR02532] prepilin-type N-terminal cleavage/methylation domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGACAAGC AACGCGGTTT TACACTTATC GAACTGATGG TGGTTATTGG CATCATTGCC
ATTTTAAGCG CCATTGGTAT TCCCGCTTAT CAAAACTACC TGCGCAAAGC CGCACTCACC
GACATGCTAC AAACCTTTGT GCCTTACCGT ACCGCCGTAG AGTTGTGCGC GCTGGAACAT
GGTGGATTAG ATACCTGCGA CGGTGGCAGC AATGGCATTC CCTCGCCTAC CACCACCCGC
TATGTTTCAG CCATGAGTGT GGCAAAGGGC GTGGTGTCGC TGACCGGGCA AGAAAGTCTC
AATGGGCTAA GCGTCGTCAT GACACCGGGT TGGGATAACG CAAACGGCGT CACCGGCTGG
ACGCGCAACT GCAATATTCA AAGTGACAGC GCATTGCAGC AAGCCTGCGA AGATGTCTTC
CGCTTTGATG ACGCCAACTA A
|
|---|
| Protein sequence | MDKQRGFTLI ELMVVIGIIA ILSAIGIPAY QNYLRKAALT DMLQTFVPYR TAVELCALEH
GGLDTCDGGS NGIPSPTTTR YVSAMSVAKG VVSLTGQESL NGLSVVMTPG WDNANGVTGW
TRNCNIQSDS ALQQACEDVF RFDDAN
|
|---|
| |