| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dd703_4034 |
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| Symbol | trmE |
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| ID | 8086527 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dickeya dadantii Ech703 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012880 |
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| Strand | - |
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| Start bp | 4675176 |
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| End bp | 4676537 |
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| Gene Length | 1362 bp |
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| Protein Length | 453 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 644838128 |
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| Product | tRNA modification GTPase TrmE |
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| Protein accession | YP_002989607 |
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| Protein GI | 242241426 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG0486] Predicted GTPase |
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| TIGRFAM ID | [TIGR00231] small GTP-binding protein domain
[TIGR00450] tRNA modification GTPase TrmE |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.461545 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGTCATT CCGACACCAT CGTCGCCCAA GCCACTCCGC CGGGACGCGG CGGTGTAGGC
ATTCTGCGAA TTTCCGGCGC CGCCGCCGCC GCCGTCGCTC AGGCGGTGCT GGGCAAACTC
CCCAGGCCGC GCCATGCGGA TTATCTGCCG TTCCGTGACA CCGACGGCAG CGTGCTCGAT
CAGGGCATCG CGCTGTGGTT CCCTGCGCCG AACTCGTTCA CCGGCGAGGA TGTACTAGAA
CTGCAAGGGC ATGGCGGGCC GGTCATCCTT GATTTGCTGC TGAAACGCAT ACTGGCCCAA
CCGGACGTGC GCATCGCCCG CCCGGGCGAG TTTTCGGAAC GCGCTTTCCT GAACGACAAG
CTCGACCTGG CGCAAGCGGA GGCGATTGCT GACCTGATCG ACGCCAGCTC CGAACAGGCG
GCTCGTTCCG CCGTCAACTC GCTACAGGGC GCTTTTTCCA CCCACGTCCA CCAATTGGTG
GAAGCGCTGA CCCATCTGCG AATCTATGTC GAAGCCGCGA TCGATTTCCC GGACGAAGAG
ATCGATTTCC TGTCGGACGG CAAAATCGAA GCGCAGCTCA ACGACGTCAT CGCCAATCTG
GACGCGGTAC GTGCACAGGC ACGCCAGGGC AGCCTGCTGA GAGAAGGGAT GAAGGTGGTA
ATTGCCGGTC GCCCCAATGC GGGCAAATCC AGCCTGCTGA ATGCGCTGGC CGGTCGCGAC
GCGGCTATCG TCACCGATAT CGCCGGCACG ACACGCGATG TATTACGCGA ACACATCCAT
ATCGACGGCA TGCCGCTGCA TATCATCGAT ACCGCCGGGC TGCGCGAAGC CAGCGACGAA
GTTGAACGCA TCGGCATCGA ACGTGCCTGG CAGGAAATCG AACAGGCTGA CCGGGTGCTG
TTTATGGTGG ACGGCACCAC TACCGATGCG GTGGAGCCGT CGGCGATATG GCCGGAATTC
ATGGCCCGCC TACCCGCGAC ACTGCCGATC ACCGTGATAC GCAACAAGGC CGACACGACC
GGCGAACCGC TGGGTATGGA GCAGAACACC CACACGCTGA TCCGATTGTC CGCCCGCACC
GGCGCAGGCG TTGATCTGCT GCGCGACCAT CTCAAACAGA GCATGGGATT CACCAGCAAT
ACGGAAGGCG GCTTTCTGGC GCGCCGCCGT CATCTGCAGG CGCTGGAACA GGCCGCAGAA
CACCTGCAAC AAGGTCATGA ACAACTGGTT GGTGCCTACG CCGGGGAACT ACTAGCCGAA
GAACTGCGGC TGGCGCAGCA AGCGTTAAGT GAAATCACCG GTGAATTCAC CTCCGACGAC
CTGCTGGGGC GGATTTTCTC CAGTTTTTGT ATTGGGAAGT AA
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| Protein sequence | MSHSDTIVAQ ATPPGRGGVG ILRISGAAAA AVAQAVLGKL PRPRHADYLP FRDTDGSVLD
QGIALWFPAP NSFTGEDVLE LQGHGGPVIL DLLLKRILAQ PDVRIARPGE FSERAFLNDK
LDLAQAEAIA DLIDASSEQA ARSAVNSLQG AFSTHVHQLV EALTHLRIYV EAAIDFPDEE
IDFLSDGKIE AQLNDVIANL DAVRAQARQG SLLREGMKVV IAGRPNAGKS SLLNALAGRD
AAIVTDIAGT TRDVLREHIH IDGMPLHIID TAGLREASDE VERIGIERAW QEIEQADRVL
FMVDGTTTDA VEPSAIWPEF MARLPATLPI TVIRNKADTT GEPLGMEQNT HTLIRLSART
GAGVDLLRDH LKQSMGFTSN TEGGFLARRR HLQALEQAAE HLQQGHEQLV GAYAGELLAE
ELRLAQQALS EITGEFTSDD LLGRIFSSFC IGK
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