Gene Dd703_3932 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDd703_3932 
Symbol 
ID8087317 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDickeya dadantii Ech703 
KingdomBacteria 
Replicon accessionNC_012880 
Strand
Start bp4555201 
End bp4557786 
Gene Length2586 bp 
Protein Length861 aa 
Translation table11 
GC content57% 
IMG OID644838023 
ProductcAMP phosphodiesterase 
Protein accessionYP_002989507 
Protein GI242241326 
COG category[T] Signal transduction mechanisms 
COG ID[COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain 
TIGRFAM ID[TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain 


Plasmid Coverage information

Num covering plasmid clones15 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGAATACT TAACGATTCC TGATAGTGAG CAGGTGTTAC TGTCAGCGCT GGAACAGTCG 
ATAGTCGCCG TTGTCCTTAT TAATGATGCT GGCTGCGTAT TGCTGTTTAA TCGCGCTGCG
GAAATCCTCT GGGGGTACGA GCGTCAGGAA ATGCGGGGTC GTCCCGTGGT GTCTTTGCTG
GCACCGGTTT GTCGTCCGGC CTACCTGGAT GCTATCCGCA GTAATCAGGC CGATTCGACG
GCTGGGGCGA AGACGAAGTG TGAGTGGTTG CTCGAGCGCA AAGACGGCGG CCAGTTCTGG
GGCCGGCTGC CGCTGTCGAA GGTCGAGGTT AATGGCCGGA CGTATCGTAT GCTGATGGCC
TGGGATGTTT CCCTGGATGT GGAAGCGCGT TGGCAAAATC GCCTGACTAT GTTGGCGATC
GATAATGCCG AACGTCCGGT GGTGCTTTTG GATAACGCCT GCCGGGTGAT CAGAGTCAAT
TATTCGTTCA GCAGGTTGTA CGGTTACGCG CTTGAAGACA TCGTCGGCAA CACGTTGGAC
GGCATCATGT CATATTCCCT GGATAGTCAG GATAGTGCCG GGAAAAAGAT GTCTGTCATG
TGGGGGCGGT CGAGGGTTCA GGCCGAGGTG GCGATCCGCT GTCGGGATGG CCGGGAGGCT
TTTGGGCGAA TGGCGAGTTC GCCGCTGATC GACGACGAAA ACGACGAATT CTACGGGTAT
TCGATCAACG TTATCTCCGA TATCACCGAG GAACAGCAGT TCCGCAGTCT GGAGCGCGAT
ATTCTTGGTG CGCTGGTGAG TAGCCTGTCG TTTGCCGAAC TGGGCGATTA CATCTGTCAG
CAGGTATCGG AGATTGTGCC GGATGTCATA CCGTCCATCA TGACTGTCGA TCATCGCGGC
ATTCTACGGC ATTGGTCGGC TCCGCAATTA CCCGATGCCT ACAATCAGCA GGTTTCCGGC
ATGGCGATCG GCGATGGCGT CGGCAGTTGC GGTACGGCCG CCTGGCGCGG CGAACCGGTC
GTGGCCGCCG ATATCGAGCA TGATGCGAGT TGGGCGATGT TTTCCCAGAT ACCGCTGGCG
TATGGTTTAC GCGCCTGTTG GTCCTATCCG ATACGGCGGC GCGACCGCAG CGTGGCGGGA
ACGGTTGCAT TCTATTCCCG CGAACTGCGG CAGCCGACGT TGTTTCATGA ACGCATCATT
GATGCCTGCA CGCACCTGTG CTCGCTGGCG ATAGAGCAGG AAGAGAATCG ACAGCGTATG
GTTCAACTGG TGCAATACGA CCCGCTGACC GGCCTGCCCA ATCAATACCA TCTGCAACGT
TATCTCGATG ACATCCTTTC CCAGCAGCCA ACAAGAGAAG TCACCCTGTT TTCCGTCGGT
CTGGATCGGT TCAAGGATAT CAATGAAGCC TTTGGTCATG CCGCCGGCGA TAGGGTGCTG
GTGGCGGTAA CACATCGTCT GCAGGCTTTT CTGCGTGCAG GCGAGTGGCT GAGCCGGCCG
GAAGGCGATC GTTTCGTGAT CGTGGCGCCG GACTGTTCAG CGCACCGGGC ATCGCTGATG
ACGGAGCAGT TACGTGAAAC CATCAGCCAG CCGGTCGAAT TGGACGGGCA CCGGTTGAGC
CTGTCGGCCA GCGTGGGGAT CAGCCACTAT CTGGAGGGAG GGAGTAACCG CGAGACGCTG
CTGGATAACG CGAAAGTCGC GATGTATCGC GCCAAAGAAG CCGGCGGCGG TTATCAGTTT
TTCAGCGCCG ACATGAATGT GGCCGCTAGC GAGCGGCTGC TATTGGGCGG TGCGCTTAAA
CGCGCCATCA ATAATGGCGA GCTGGAGCTT TATTATCAGC CCCAGATTCG GTTGGACAGT
GGCGAGTTGT ACGGTATGGA GGCGTTAGCC CGCTGGTACG ACCCCGTCTT CGGCAATGTC
CCGACCAGTA AATTCATTGC GCTGGCGGAA GATATCGGCG AGATCGAAGC CCTGAGCTAT
TGGGCGTTGT GCGAGGCGTG CCGTCAGCTG TCGTTGTGGG ATCTGGCCGG GGCGAGGGTG
CCGGTGGTCT CGGTGAATTT TTCTCCGCTC TGTTTTCATC GCGATCTGCC GGAGACGATC
ACCACAATCC TGCAGAGTTT TTCCCTGACC GGCGAGCGCC TTACTATCGA GATTACCGAG
AGCGCCGCGA TGGCGCTGAC GCCGGATATG TTGGCCGTGG TGCATCGTAT CCGCGGCAAC
GGCATTGGTG TTTCGATTGA TGATTTCGGT ACCGGTTTTT CCAATCTCTC TAATCTGGTG
AACCTGCCGG TGACTGAAGT CAAAATCGAC CGTAGTTTTA TCGACAAGTG TGAGTCCGAA
GAGCGTCTCC AGGCGTTGGT TGAAGCGGTG GTCGGCATTG GCCGCAGCCT GAAACTGGAG
GTGGTGGCGG AAGGGGTGGA AACCGAAGGA CAAAGCGCGT TGATCGGCAA ACTGGGCGGC
CGTATTGCAC AAGGTTATCT GTTCGCCCGC CCGATGAAAG CGTCGGATGT GCCGGGGTGG
CTGCAGGAAT ATCAGGCGGG AAAACATCGC CCGGATGCCG TGCAACCCTC TGATGCGGAT
GCTTAA
 
Protein sequence
MEYLTIPDSE QVLLSALEQS IVAVVLINDA GCVLLFNRAA EILWGYERQE MRGRPVVSLL 
APVCRPAYLD AIRSNQADST AGAKTKCEWL LERKDGGQFW GRLPLSKVEV NGRTYRMLMA
WDVSLDVEAR WQNRLTMLAI DNAERPVVLL DNACRVIRVN YSFSRLYGYA LEDIVGNTLD
GIMSYSLDSQ DSAGKKMSVM WGRSRVQAEV AIRCRDGREA FGRMASSPLI DDENDEFYGY
SINVISDITE EQQFRSLERD ILGALVSSLS FAELGDYICQ QVSEIVPDVI PSIMTVDHRG
ILRHWSAPQL PDAYNQQVSG MAIGDGVGSC GTAAWRGEPV VAADIEHDAS WAMFSQIPLA
YGLRACWSYP IRRRDRSVAG TVAFYSRELR QPTLFHERII DACTHLCSLA IEQEENRQRM
VQLVQYDPLT GLPNQYHLQR YLDDILSQQP TREVTLFSVG LDRFKDINEA FGHAAGDRVL
VAVTHRLQAF LRAGEWLSRP EGDRFVIVAP DCSAHRASLM TEQLRETISQ PVELDGHRLS
LSASVGISHY LEGGSNRETL LDNAKVAMYR AKEAGGGYQF FSADMNVAAS ERLLLGGALK
RAINNGELEL YYQPQIRLDS GELYGMEALA RWYDPVFGNV PTSKFIALAE DIGEIEALSY
WALCEACRQL SLWDLAGARV PVVSVNFSPL CFHRDLPETI TTILQSFSLT GERLTIEITE
SAAMALTPDM LAVVHRIRGN GIGVSIDDFG TGFSNLSNLV NLPVTEVKID RSFIDKCESE
ERLQALVEAV VGIGRSLKLE VVAEGVETEG QSALIGKLGG RIAQGYLFAR PMKASDVPGW
LQEYQAGKHR PDAVQPSDAD A