Gene Dd703_3904 details

Gene Information

• Locus tag: Dd703_3904
• Symbol: dppD
• ID: 8087289
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Dickeya dadantii Ech703
• Kingdom: Bacteria
• Replicon accession: NC_012880
• Strand: -
• Start bp: 4523543
• End bp: 4524523
• Gene Length: 981 bp
• Protein Length: 326 aa
• Translation table: 11
• GC content: 59%
• IMG OID: 644837995
• Product: dipeptide transporter ATP-binding subunit
• Protein accession: YP_002989479
• Protein GI: 242241298
• COG category: [E] Amino acid transport and metabolism; [P] Inorganic ion transport and metabolism
• COG ID: [COG0444] ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component
• TIGRFAM ID: [TIGR01727] oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain

Plasmid Coverage information

• Num covering plasmid clones: 11
• Plasmid unclonability p-value: 0.463258
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGCGTTAC TCAATGTAGA ACAATTGTCG GTGCATTTTG GCGACGACAA ACTGCCGTTC 
AAGGCGGTGG ATCGCATCAG TTATCAGGTC GAGCAGGGGC AGGTGGTCGG CATCGTCGGC 
GAATCCGGTT CCGGCAAATC CGTCAGTTCG CTGGCGATCA TGGGGCTGAT TGATTTCCCC 
GGCAAGGTGA TGGCCGACCG GCTGGAATTT GACCGGCGCG ATTTACAGAC GCTGTCTGAA 
AAAGAGCGGC GTCAATTGGT CGGGTCGGAA GTGGCGATGA TTTTCCAGGA TCCGATGACC 
AGCCTTAACC CGTGTTACAC CGTGGGCTAC CAGATCATGG AAGCCATCAA GGTACATCAG 
GGCGGCAACC GTAAAACCCG CCGTCAACGG GCTATCGATC TGTTGAATCA GGTCGGTATC 
CCTGATCCGG AATCGCGGCT GGATGTGTTT CCGCATCAGC TGTCCGGGGG GATGAGCCAG 
CGCGTGATGA TCGCCATGGC GATCGCCTGC CGGCCCAAGC TGTTGATCGC CGACGAGCCG 
ACGACGGCGC TGGACGTGAC CATTCAGGCG CAGATCATCG AACTGCTGCT GGACTTGCAG 
CAGAAAGAGA ACATGGCGCT GATCCTGATT ACCCACGATC TGGCGCTGGT GGCGGAAGCG 
GCGCAGCACA TCATCGTGAT GTACGCCGGT CAGGTGGTGG AATCGGGCCG GGCGGAGGAT 
ATTTTCCATG CGCCGCGTCA CCCTTACACC CAGGCGTTAT TGCGCGCATT GCCGGAGTTT 
GCGGTGGATA AATCCCGTCT GGCGTCGCTG CCGGGCGTGG TGCCGGGCAA GTATGACCGG 
CCGAACGGCT GCCTGCTGAA TCCACGCTGT CCGTATGCCA GCGATCGTTG CCGTCAGGAA 
GAACCTGCGC TGCGGGATAT CCCCGGTCGT CAGGTGAAAT GTCACACACC GCTGGATGAT 
GCGGGGAGGC CAACCGTATG A 

 

Protein sequence

MALLNVEQLS VHFGDDKLPF KAVDRISYQV EQGQVVGIVG ESGSGKSVSS LAIMGLIDFP 
GKVMADRLEF DRRDLQTLSE KERRQLVGSE VAMIFQDPMT SLNPCYTVGY QIMEAIKVHQ 
GGNRKTRRQR AIDLLNQVGI PDPESRLDVF PHQLSGGMSQ RVMIAMAIAC RPKLLIADEP 
TTALDVTIQA QIIELLLDLQ QKENMALILI THDLALVAEA AQHIIVMYAG QVVESGRAED 
IFHAPRHPYT QALLRALPEF AVDKSRLASL PGVVPGKYDR PNGCLLNPRC PYASDRCRQE 
EPALRDIPGR QVKCHTPLDD AGRPTV