Gene Dd703_3900 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDd703_3900 
Symbol 
ID8087285 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDickeya dadantii Ech703 
KingdomBacteria 
Replicon accessionNC_012880 
Strand+ 
Start bp4519667 
End bp4520359 
Gene Length693 bp 
Protein Length230 aa 
Translation table11 
GC content62% 
IMG OID644837991 
ProductHelix-turn-helix type 11 domain protein 
Protein accessionYP_002989475 
Protein GI242241294 
COG category[K] Transcription 
COG ID[COG2378] Predicted transcriptional regulator 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value0.543885 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGTCCCGAA CCCAGCGACT ACTGACTCTG GTTCAACTGC TGCGAAATCA CCGGTTTGCC 
GTCCCCGGCC CGCAGCTGGC GGAGCAACTG GGCGTCAGTC TGCGCACGCT TTATCGCGAT 
ATCGCCACAT TGCAGGAGCA GGGCGCAACC ATCGTCGGCG AGGCCGGCCT GGGTTATGTG 
TTGTTGCCCG GTTTTACCCT GCCGCCGCTG ATGTTCAGCG AAGAGGAGAT CGAAGCGCTG 
GTGCTGGGTT CGCGCTGGGT CGCCAGACAG GCGGATCCCC GTTTGCAGGA AGGCGCCCGC 
AGCGCATTGA TGAAGATAGC CGCCATCTTG CCGGATACGC TGCGGGAAAC GCTGGACGCC 
ACCGCCTTGC TGGTCGCCAC GCCGCGCGAA AATACCACGG ATACCGTCGA TATCCCGTTG 
TTACGCCGGG CCATCCGCCG CGGACGCAAA GTGACGGTAC GCTACCGGGA TCGTCAGGGA 
CAGGAGTCGG AACGTTGCAT CTGGCCCTTT GTGCTCGGCT ATTTTGAACA GGTACGCCTG 
GTCGGCGCCT GGTGCGAAAC ACGCCAGGCT TTCCGCCATT TCCGCACCGA CAGCATCCTT 
GCGCTACGGG TGGAAGAACA GACCTACCCG GTATCCCGGC GCCGTCTGCT CAAGCAATGG 
AGCGAACAGG AGGGGATCAG CCTGCCGTTC TAA
 
Protein sequence
MSRTQRLLTL VQLLRNHRFA VPGPQLAEQL GVSLRTLYRD IATLQEQGAT IVGEAGLGYV 
LLPGFTLPPL MFSEEEIEAL VLGSRWVARQ ADPRLQEGAR SALMKIAAIL PDTLRETLDA 
TALLVATPRE NTTDTVDIPL LRRAIRRGRK VTVRYRDRQG QESERCIWPF VLGYFEQVRL 
VGAWCETRQA FRHFRTDSIL ALRVEEQTYP VSRRRLLKQW SEQEGISLPF