| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dd703_3766 |
|---|
| Symbol | |
|---|
| ID | 8087144 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dickeya dadantii Ech703 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012880 |
|---|
| Strand | + |
|---|
| Start bp | 4369810 |
|---|
| End bp | 4371309 |
|---|
| Gene Length | 1500 bp |
|---|
| Protein Length | 499 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 644837851 |
|---|
| Product | sodium/proline symporter |
|---|
| Protein accession | YP_002989342 |
|---|
| Protein GI | 242241161 |
|---|
| COG category | [E] Amino acid transport and metabolism
[R] General function prediction only |
|---|
| COG ID | [COG0591] Na+/proline symporter |
|---|
| TIGRFAM ID | [TIGR00813] transporter, SSS family
[TIGR02121] sodium/proline symporter |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.525061 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACGATGA TGAGCACACC GATGCTGGTA ACATTTCTGG TGTACATCTT CGGGATGGTC
CTGATCGGCC TGTTTGCCTA CCGCGCCACT GACAATTTCA GCGACTATAT CCTGGGCGGC
CGCCGCATGG GCAGCATTGT CACCGCCCTG TCCGCCGGCG CTTCCGACAT GAGCGGCTGG
CTGTTGATGG GCCTGCCGGG CGCCGTGTTT CTGTCGGGGA TTTCTGAAAG TTGGATTGCC
ATCGGCCTGA CGCTGGGCGC CTATCTGAAC TGGAAATGGG TAGCAGGACG CCTGCGCGTG
CACACTGAAG TCAACCATAA CGCGTTGACA TTACCGGACT ATTTCAGCCA TCGCTTTGAT
GATCAAAGCA AACTGCTGCG CGTGATTTCC GCACTGGTGA TCCTGGTGTT CTTCACCATT
TATTGCGCAT CCGGCATCGT AGCGGGCGCC CGGTTGTTTG AAAGTACATT CGGCCTCAGC
TACAACACCG CATTGTGGGC CGGCGCCCTC GCGACTATCG CTTACACTTT TATCGGCGGT
TATCTGGCCG TCAGCTGGAC CGATACCGTC CAGGCCAGCC TGATGATCTT CGCGCTGATT
CTGACGCCGG TTATCGTCAT CCTCTCCGTC GGCGGCATTG CGCCGTCGCT GAGCGTGATT
GAGGCTAAAA ACCTGTCCAA TTTGGATATG TTCCGCGGGC TGGATCTGGT GGCCATCCTT
TCGCTGATGG GCTGGGGTCT GGGTTATTTC GGGCAACCGC ACATTCTGGC GCGTTTTATG
GCGGCCGACT CGCATCACAC CATCCATAAC GCCCGCCGCA TCAGCATGAT CTGGATGGTG
CTCTGTCTGG CGGGCGCCGT GACCGTCGGC TTTTTCGGCA TCGCCTACTT CACCCAAAAC
CCGGAACAGG CCGGCAATGT GTCGCAAAAC GGCGAGCGCG TCTTTATCGA ACTGGCCCGG
CTGCTGTTCA ACCCGTGGGT CGCCGGCATA CTGCTGTCCG CTATTTTAGC GGCGGTGATG
AGCACCCTAA GCTGCCAGTT GCTGGTCTGC TCCAGCGCCA TCACGGAAGA TCTGTACAAA
CCGTTTTTGC GTAAAAACGC CAGCCAGAAA GAGCTGGTGT GGGTAGGCCG CGGGATGGTG
CTGCTGGTAT CGTTAGTGGC TATCGCGCTC GCCGCCAATC CGGCCAACCG TGTACTCGGG
CTGGTTAGCT ATGCCTGGGC CGGCTTTGGC GCCGCATTCG GGCCGGTGAT TCTGATTTCG
CTGTTGTGGC CGCGCATGAC CCGTAACGGC GCGCTGTTCG GTATGCTGGT CGGCGCAGCG
ACCGTCATCA TCTGGAAACA GTACGGTTGG CTGAACCTGT ATGAAATCAT CCCTGGTTTC
CTGTTCGGCT CGGTCACGAT CGTGCTGGTT AGCCTGCTGG GACGCACGCC GTCTGCGGCT
GTGACCGAGC GCTTCCATCA GGCTGAGCGG GAGTTTAAAT CCGCCCCGGC GGATGCCTGA
|
|---|
| Protein sequence | MTMMSTPMLV TFLVYIFGMV LIGLFAYRAT DNFSDYILGG RRMGSIVTAL SAGASDMSGW
LLMGLPGAVF LSGISESWIA IGLTLGAYLN WKWVAGRLRV HTEVNHNALT LPDYFSHRFD
DQSKLLRVIS ALVILVFFTI YCASGIVAGA RLFESTFGLS YNTALWAGAL ATIAYTFIGG
YLAVSWTDTV QASLMIFALI LTPVIVILSV GGIAPSLSVI EAKNLSNLDM FRGLDLVAIL
SLMGWGLGYF GQPHILARFM AADSHHTIHN ARRISMIWMV LCLAGAVTVG FFGIAYFTQN
PEQAGNVSQN GERVFIELAR LLFNPWVAGI LLSAILAAVM STLSCQLLVC SSAITEDLYK
PFLRKNASQK ELVWVGRGMV LLVSLVAIAL AANPANRVLG LVSYAWAGFG AAFGPVILIS
LLWPRMTRNG ALFGMLVGAA TVIIWKQYGW LNLYEIIPGF LFGSVTIVLV SLLGRTPSAA
VTERFHQAER EFKSAPADA
|
|---|
| |