| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dd703_3678 |
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| Symbol | |
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| ID | 8087044 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dickeya dadantii Ech703 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012880 |
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| Strand | - |
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| Start bp | 4264337 |
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| End bp | 4266259 |
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| Gene Length | 1923 bp |
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| Protein Length | 640 aa |
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| Translation table | 11 |
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| GC content | 56% |
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| IMG OID | 644837754 |
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| Product | regulatory protein CsrD |
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| Protein accession | YP_002989257 |
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| Protein GI | 242241076 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2200] FOG: EAL domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.012256 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTTGATGA CATTACTGAC GGCATTAGCC ATTACGCTGA TGCTGGTCAG CGGTATTTTC
AGTGTTGTCA GTTACAGCCA GCAGCGCATG GATAACCAGT TGAAAGGCGT TGCCGCCAGT
ATTGATCAGG CGTTGTTGGT ACAGCCTCCT GGCGCGATAC AGTTCTGGCT GCCTGCGGTG
ATGAAGGCTG CAGGCATTAT CGAACTGGAT ATGCGCGATG AAAACGACAG TATCTATCTG
TTGCGCCTGC CGGACGTACA AAACGGCGAT AGCGCCCATG CGCTGGTTTA CCGTCACGCC
ACATTACCTT TGATGCATCA CACCGACCTG CAGATTCAAG TCACTTATGC CGATCCATTG
TTTGGCTCGC CGCGTTATCT GAAATCCGCG TTGTCGGTTC TCTTAGTGAT TCTGGTGATG
TCGTTGCTGG TGTTTCATGC TGTACGTTGG GTGCGGCGAC AAACCGCCGG CCAGGAACAG
CTGGAAGCCC GGTCGAAGCG CATTTTGTAT GGCGAGCGCG AAAACGTCAT GCACGGTTCC
GTGCACGAAT GGCCCGCCAG TGCCAGCAGC GCCCTGGATC AACTGCTGGC GGATCTGGTA
GACGCGCGGG AGGAGCGCAG CCGGGTGGAT ACATTGATCC GTGCTTTTGC GGCGCAGGAT
GCAGAAACCG GGCTTAACAA CCGGCTGTTT TTCGAAAACC AACTCGCCAC CCAACTGGAA
GATGCGGAAG ATGTGGGTAC CCATGGCGTA GTGATGATGA TCCGTCTGCC CGATTTCGAC
ACATTGCAGG AAATGCACGG CTATGGCGGC GTGATCGACG AATACCGCAA TACGTTGATC
AATCTGCTGT CGACCTTTGT TCTGCGTTAC CCGTCGGCCT TGCTGGCCCG TTATTACCAC
AGCGATTTTA CCGTGTTGCT GCCGCATCGG ACGCTCAAAG AGGCCGACAA TATCGCCAGT
CAACTGGTCA AGGCCATCGA TATCCTGCCT TTTACGCCGA TTATCGACCG CGAAGATATC
GTACACATCG GTATCTGCGC CTATCGCAGC GGGCAAACCA CCGAGCAGGT GATGGACTGT
GTAGAGGATG CGACTCGCAA TGCGGTGTTG CAGGGCGGCA ATGGTTGGTG CGTCTACGAC
CGCCAGGTGC CGGAGAAGGG CCGCGGCAGC GTCAAGTGGC GCACGTTGCT GGAGCACACG
TTATCACGCG GCGGGCCTCG TCTGTATCAG AAACCGGCGA TTACCCGCAA CGGCGACGTG
CATCACCGAG AATTGTTCAG CCGTATCTTT GATGGTTCTC AGGAACTGCT GGAGGCGGAG
TATATGCCGC TGGTGCGTCA ACTGGGCCTG ACGACCAGCT ATGATCGGCA ATTGATTAAC
CGCGCCATCG CCCTAACCGG AATCTGGCCG CAGACGGTGC TGGCGTTCTC GATTACGGTC
GATTCCCTCT TACAGCGCTC TTTCCTGCGC TGGTTGCGCA ACACACTGCT ACAGTGCCCG
AAAAAGCAGC GCGAACGGCT GTTGTTTGAG TTGGCCGAGG CGGATGTCTG TCAGTACATC
AGCCGGTTGC GGCCGATTGT CAGGATGATT ACTGGGATGG GGTGTCGGCT GGCGGTGACG
CAAGCCGGGC TGACGCTGGT CAGCACTACG TATATCAAAT CGTTGCAGGT GGATGTCATC
AAACTGCATC CCGGGTTGGT GCGCAGTCTG GATAAGCGCC TGGAAAACCA GCTGTTTATC
TCCAGTTTGG TTGAGGCTTG CAAGGGTACG AAAGCACAGG TATTCGCTAC CGGAGTCAGA
ACCCGGGAAG AGTGGCATAC ACTGCTGGAT AAAGGCGTAT TCGGTGGGCA GGGCGATCGG
TTCGCCGCTT CCGAACCGGT GGGCGAGACG CTGAAAAAAT ATTCATCGAG AATGTGTGTT
TAA
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| Protein sequence | MLMTLLTALA ITLMLVSGIF SVVSYSQQRM DNQLKGVAAS IDQALLVQPP GAIQFWLPAV
MKAAGIIELD MRDENDSIYL LRLPDVQNGD SAHALVYRHA TLPLMHHTDL QIQVTYADPL
FGSPRYLKSA LSVLLVILVM SLLVFHAVRW VRRQTAGQEQ LEARSKRILY GERENVMHGS
VHEWPASASS ALDQLLADLV DAREERSRVD TLIRAFAAQD AETGLNNRLF FENQLATQLE
DAEDVGTHGV VMMIRLPDFD TLQEMHGYGG VIDEYRNTLI NLLSTFVLRY PSALLARYYH
SDFTVLLPHR TLKEADNIAS QLVKAIDILP FTPIIDREDI VHIGICAYRS GQTTEQVMDC
VEDATRNAVL QGGNGWCVYD RQVPEKGRGS VKWRTLLEHT LSRGGPRLYQ KPAITRNGDV
HHRELFSRIF DGSQELLEAE YMPLVRQLGL TTSYDRQLIN RAIALTGIWP QTVLAFSITV
DSLLQRSFLR WLRNTLLQCP KKQRERLLFE LAEADVCQYI SRLRPIVRMI TGMGCRLAVT
QAGLTLVSTT YIKSLQVDVI KLHPGLVRSL DKRLENQLFI SSLVEACKGT KAQVFATGVR
TREEWHTLLD KGVFGGQGDR FAASEPVGET LKKYSSRMCV
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