Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Dd703_3657 |
Symbol | |
ID | 8087023 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Dickeya dadantii Ech703 |
Kingdom | Bacteria |
Replicon accession | NC_012880 |
Strand | + |
Start bp | 4241411 |
End bp | 4242847 |
Gene Length | 1437 bp |
Protein Length | 478 aa |
Translation table | 11 |
GC content | 56% |
IMG OID | 644837733 |
Product | RNA polymerase factor sigma-54 |
Protein accession | YP_002989236 |
Protein GI | 242241055 |
COG category | [K] Transcription |
COG ID | [COG1508] DNA-directed RNA polymerase specialized sigma subunit, sigma54 homolog |
TIGRFAM ID | [TIGR02395] RNA polymerase sigma-54 factor |
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Plasmid Coverage information |
Num covering plasmid clones | 7 |
Plasmid unclonability p-value | 0.0558274 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAAGCAAG GTTTGCAACT CAGGCTTAGT CAGCAACTGG CTATGACACC GCAATTACAG CAGGCGATCC GTCTACTGCA ATTGTCCACA CTTGAACTCC AGCAGGAAAT CCAACAGGCG CTGGAAAGCA ACCCATTGCT GGAACAGGCT GACAACCATG AAGAAGTAGA AACGCAGGAA AGTAGCGACC ACGAAACGCT GGACACCCGC GAAGCGCTGG AGCAGAAGGA AATGCCGGAC GAGCTGCCGC TCGACGCCGC CTGGGATGAA ATCTATACCG CAGGCACACC GTCCGGCACC AGTACCGATT ATCGCGACGA AGAGCTGCCG GTCTATCAGG GCGAAACCAC TCAGACGTTG CAGGATTATC TGATGTGGCA GGTGGAACTG ACGCCGTTCT CCGATACCGA TGCCGCCATT GCAACCTCAA TCGTCGATGC AGTCGACAAT ACCGGCTATC TGACGGTTTC GCTGGAGGAT ATCCGCGACA GCATCGGCGA CGACAGCCTC ACGCTGGAAG AGGTGGAGGC CGTACTGAAA CGAGTGCAGC GCTTCGATCC CGTCGGCGTC GGCGCCCGCG ACCTGCGCGA ATGCCTGCTG GTACAGTTAT CCCAGTTTGA TGAAAAAACC ACGCCGCGGC TGGCCGAAGC CAGAATGATC GTCAGCGAAT ATCTGGATCT GCTGGCCAAC CATGATTTCC GGATGCTGAT CCGTTCCAGT CGAATGAAGG AAGAAACGCT GAAAGAAGCG TTGGCGCTGA TCCAATCGCT CGACCCGCGC CCCGGCCAGT CCATCAATAC CGGCGAATCG GAATACGTGA TCCCGGATGT CCTGGTTCGC AAGATCCAAG GTCATTGGGC GGTGGAGCTG AATACCGACA GCGTGCCCAG ACTACAGATC AACCAGCAGT ACGCCGCACT CGGCAACAAC GCCCGTAACG ACAGTGACGG TCAGTTCATC CGCAGCCATT TGCAGGAAGC CCGCTGGCTG ATCAAAAGCT TGGAAAGCCG CAACGACACG TTGCTGAAAG TCACCCGCTG CATCGTAGAA CAGCAGCAGG CGTTTTTTGA ACATGGCGAG GAATTCATGA AACCCATGGT ACTGGCGGAT ATCGCTCAGG CCGTGGATAT GCACGAGTCC ACCATCTCCC GCGTGACAAC CCAAAAATTT CTACATAGCC CGCGGGGCAT TTTCGAATTG AAGTATTTTT TCTCCAGCCA CGTCAACACC GACAGCGGCG GCGAAGCGTC ATCCACCGCC ATCCGTGCGC TGGTCAAGAA ACTGATTGCA GCGGAAAACC CTGCAAAACC TCTGAGCGAC AGCAAGCTGA CCACCCTACT CTCCGAACAG GGCATTATCG TGGCGCGGCG CACTGTAGCA AAATATCGCG AGTCTTTATC CATCCCGCCG TCGAATCAAC GTAAACAGCT GGTTTGA
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Protein sequence | MKQGLQLRLS QQLAMTPQLQ QAIRLLQLST LELQQEIQQA LESNPLLEQA DNHEEVETQE SSDHETLDTR EALEQKEMPD ELPLDAAWDE IYTAGTPSGT STDYRDEELP VYQGETTQTL QDYLMWQVEL TPFSDTDAAI ATSIVDAVDN TGYLTVSLED IRDSIGDDSL TLEEVEAVLK RVQRFDPVGV GARDLRECLL VQLSQFDEKT TPRLAEARMI VSEYLDLLAN HDFRMLIRSS RMKEETLKEA LALIQSLDPR PGQSINTGES EYVIPDVLVR KIQGHWAVEL NTDSVPRLQI NQQYAALGNN ARNDSDGQFI RSHLQEARWL IKSLESRNDT LLKVTRCIVE QQQAFFEHGE EFMKPMVLAD IAQAVDMHES TISRVTTQKF LHSPRGIFEL KYFFSSHVNT DSGGEASSTA IRALVKKLIA AENPAKPLSD SKLTTLLSEQ GIIVARRTVA KYRESLSIPP SNQRKQLV
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