Gene Dd703_3657 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDd703_3657 
Symbol 
ID8087023 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDickeya dadantii Ech703 
KingdomBacteria 
Replicon accessionNC_012880 
Strand
Start bp4241411 
End bp4242847 
Gene Length1437 bp 
Protein Length478 aa 
Translation table11 
GC content56% 
IMG OID644837733 
ProductRNA polymerase factor sigma-54 
Protein accessionYP_002989236 
Protein GI242241055 
COG category[K] Transcription 
COG ID[COG1508] DNA-directed RNA polymerase specialized sigma subunit, sigma54 homolog 
TIGRFAM ID[TIGR02395] RNA polymerase sigma-54 factor 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.0558274 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAAGCAAG GTTTGCAACT CAGGCTTAGT CAGCAACTGG CTATGACACC GCAATTACAG 
CAGGCGATCC GTCTACTGCA ATTGTCCACA CTTGAACTCC AGCAGGAAAT CCAACAGGCG
CTGGAAAGCA ACCCATTGCT GGAACAGGCT GACAACCATG AAGAAGTAGA AACGCAGGAA
AGTAGCGACC ACGAAACGCT GGACACCCGC GAAGCGCTGG AGCAGAAGGA AATGCCGGAC
GAGCTGCCGC TCGACGCCGC CTGGGATGAA ATCTATACCG CAGGCACACC GTCCGGCACC
AGTACCGATT ATCGCGACGA AGAGCTGCCG GTCTATCAGG GCGAAACCAC TCAGACGTTG
CAGGATTATC TGATGTGGCA GGTGGAACTG ACGCCGTTCT CCGATACCGA TGCCGCCATT
GCAACCTCAA TCGTCGATGC AGTCGACAAT ACCGGCTATC TGACGGTTTC GCTGGAGGAT
ATCCGCGACA GCATCGGCGA CGACAGCCTC ACGCTGGAAG AGGTGGAGGC CGTACTGAAA
CGAGTGCAGC GCTTCGATCC CGTCGGCGTC GGCGCCCGCG ACCTGCGCGA ATGCCTGCTG
GTACAGTTAT CCCAGTTTGA TGAAAAAACC ACGCCGCGGC TGGCCGAAGC CAGAATGATC
GTCAGCGAAT ATCTGGATCT GCTGGCCAAC CATGATTTCC GGATGCTGAT CCGTTCCAGT
CGAATGAAGG AAGAAACGCT GAAAGAAGCG TTGGCGCTGA TCCAATCGCT CGACCCGCGC
CCCGGCCAGT CCATCAATAC CGGCGAATCG GAATACGTGA TCCCGGATGT CCTGGTTCGC
AAGATCCAAG GTCATTGGGC GGTGGAGCTG AATACCGACA GCGTGCCCAG ACTACAGATC
AACCAGCAGT ACGCCGCACT CGGCAACAAC GCCCGTAACG ACAGTGACGG TCAGTTCATC
CGCAGCCATT TGCAGGAAGC CCGCTGGCTG ATCAAAAGCT TGGAAAGCCG CAACGACACG
TTGCTGAAAG TCACCCGCTG CATCGTAGAA CAGCAGCAGG CGTTTTTTGA ACATGGCGAG
GAATTCATGA AACCCATGGT ACTGGCGGAT ATCGCTCAGG CCGTGGATAT GCACGAGTCC
ACCATCTCCC GCGTGACAAC CCAAAAATTT CTACATAGCC CGCGGGGCAT TTTCGAATTG
AAGTATTTTT TCTCCAGCCA CGTCAACACC GACAGCGGCG GCGAAGCGTC ATCCACCGCC
ATCCGTGCGC TGGTCAAGAA ACTGATTGCA GCGGAAAACC CTGCAAAACC TCTGAGCGAC
AGCAAGCTGA CCACCCTACT CTCCGAACAG GGCATTATCG TGGCGCGGCG CACTGTAGCA
AAATATCGCG AGTCTTTATC CATCCCGCCG TCGAATCAAC GTAAACAGCT GGTTTGA
 
Protein sequence
MKQGLQLRLS QQLAMTPQLQ QAIRLLQLST LELQQEIQQA LESNPLLEQA DNHEEVETQE 
SSDHETLDTR EALEQKEMPD ELPLDAAWDE IYTAGTPSGT STDYRDEELP VYQGETTQTL
QDYLMWQVEL TPFSDTDAAI ATSIVDAVDN TGYLTVSLED IRDSIGDDSL TLEEVEAVLK
RVQRFDPVGV GARDLRECLL VQLSQFDEKT TPRLAEARMI VSEYLDLLAN HDFRMLIRSS
RMKEETLKEA LALIQSLDPR PGQSINTGES EYVIPDVLVR KIQGHWAVEL NTDSVPRLQI
NQQYAALGNN ARNDSDGQFI RSHLQEARWL IKSLESRNDT LLKVTRCIVE QQQAFFEHGE
EFMKPMVLAD IAQAVDMHES TISRVTTQKF LHSPRGIFEL KYFFSSHVNT DSGGEASSTA
IRALVKKLIA AENPAKPLSD SKLTTLLSEQ GIIVARRTVA KYRESLSIPP SNQRKQLV