| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dd703_3485 |
|---|
| Symbol | rhaB |
|---|
| ID | 8089440 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dickeya dadantii Ech703 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012880 |
|---|
| Strand | + |
|---|
| Start bp | 4056740 |
|---|
| End bp | 4058212 |
|---|
| Gene Length | 1473 bp |
|---|
| Protein Length | 490 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 644837563 |
|---|
| Product | rhamnulokinase |
|---|
| Protein accession | YP_002989067 |
|---|
| Protein GI | 242240886 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG1070] Sugar (pentulose and hexulose) kinases |
|---|
| TIGRFAM ID | [TIGR02627] rhamnulokinase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCGATAA CACACAGCGT AGCGGTCGAT CTCGGCGCAT CCAGCGGAAG GGTCATGCTG
GCGTCGCTGG ACACGGACAC CCAGCGTCTC TCGCTGGAGG AGATCCACCG TTTCAGCAAT
CGTCTGGTGG TTGATCACGG GCATCACCTG TGGGATCTGG ACGCACTGGA GCGGCACATT
TTGCAAGGTC TGAATACAGT GGATCGGCGC GGGATCCGGC CAGCCAGCAT CGGCATCGAC
AGCTGGGGAG TCGATATGGT GGCGCTGGAT CGACAGGGCC AGCGTATCGG GCCGCCCTAT
TCCTATCGGG ATCACCGCAC CGACGGCGTG ATGGCGCAGG TCATCGCCGA CCTCGGACGC
GACACCCTCT ATCGTCACAC CGGCATTCAG TTTCTGCCGT TCAACACCCT TTACCAGCTC
CGGGCGCTGC GCCAGCAGCA ACCGGAATAT TGGGCGCAAA TCGCGCACCT GCTGATGATC
CCCGACTACT TTCACTATCG GCTGACCGGC AGGATGGCGA GCGAATACAC CAACGCTACC
ACCACCCAGA TGCTGAATCT GACCCGCGGT GACTGGGATC CGCTGCTGCT GGATTACCTC
GGCATCCAAG CACACTGGCT GCCGGCACCT AGCCAGCCCG GCGATCCTCT GGGCGACTGG
CTCGCCCCCA GCGGCGCCCG CATCCCGGTG ATTGCCGTCG CCAGTCACGA CACCGCCAGC
GCGGTGGTCG CCACCCCGTT GAACGATGAC GACAGCGCCT ACCTCAGCTC CGGCACCTGG
TCGCTTATCG GCATCGAAAG CCAGACGCCG TTCATCAGTG ACCGCGCGAT GGCCGCCAAC
ATCACCAATG AAGGCGGAAC CAACGGGCGT TATCGCGTCC TGAAAAACAT CATGGGGCTG
TGGCTACTGC AACGCATCAG CCAGGAACAG CAGGTGAGCG ATCTGCCGGC GCTGTTGGAG
GCGGCGGAAC AGGAAACCGG CTTCGCCAGC CTTATCAATC CGAACGACGA GCGCTTCATC
AATCCGCCGT CCATGAGCGA GGCGATCCGC GATTTTTGCC GCGAGCACCG GCAACCGGTG
CCGCAAACGT CTGCCGCGAT GACGCGCTGC ATCATGGATA GTCTGGCGCT CGGCTACCGG
CAGGGCCTGC TGACGCTGGC GTCGCTGCGT CAGTCGCCGA TCCGCCGTCT GCATGTGGTG
GGCGGCGGCT GCCAGAACCG GCTGCTGAAT CAGCTTTGCG CCGATGTGTG CCAGATTCCG
GTGGTGGCCG GCCCGGTAGA AGCCTCCACT CTCGGCAATA TCGGCTGCCA GCTGATCGCC
CAGGGCGAAG TGGCCGATCT GGCGGCGTTC CGTCGCTTGC TGCCCGACAG TTTCCCGCTG
CAACACTATA CCCCCCGTCA GGATATTGAT TTCACTGGCC ATTGGCGCCG TTTCCAGGCG
CTTTGCCAGA TTAATGAGGA ACTCACCGTA TGA
|
|---|
| Protein sequence | MAITHSVAVD LGASSGRVML ASLDTDTQRL SLEEIHRFSN RLVVDHGHHL WDLDALERHI
LQGLNTVDRR GIRPASIGID SWGVDMVALD RQGQRIGPPY SYRDHRTDGV MAQVIADLGR
DTLYRHTGIQ FLPFNTLYQL RALRQQQPEY WAQIAHLLMI PDYFHYRLTG RMASEYTNAT
TTQMLNLTRG DWDPLLLDYL GIQAHWLPAP SQPGDPLGDW LAPSGARIPV IAVASHDTAS
AVVATPLNDD DSAYLSSGTW SLIGIESQTP FISDRAMAAN ITNEGGTNGR YRVLKNIMGL
WLLQRISQEQ QVSDLPALLE AAEQETGFAS LINPNDERFI NPPSMSEAIR DFCREHRQPV
PQTSAAMTRC IMDSLALGYR QGLLTLASLR QSPIRRLHVV GGGCQNRLLN QLCADVCQIP
VVAGPVEAST LGNIGCQLIA QGEVADLAAF RRLLPDSFPL QHYTPRQDID FTGHWRRFQA
LCQINEELTV
|
|---|
| |