Gene Dd703_3370 details

Gene Information

• Locus tag: Dd703_3370
• ID: 8089322
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Dickeya dadantii Ech703
• Kingdom: Bacteria
• Replicon accession: NC_012880
• Strand: +
• Start bp: 3942376
• End bp: 3944214
• Gene Length: 1839 bp
• Protein Length: 612 aa
• Translation table: 11
• GC content: 53%
• IMG OID: 644837448
• Product: RNA polymerase sigma factor RpoD
• Protein accession: YP_002988954
• Protein GI: 242240773
• COG category: [K] Transcription
• COG ID: [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)
• TIGRFAM ID: [TIGR02393] RNA polymerase sigma factor RpoD, C-terminal domain; [TIGR02937] RNA polymerase sigma factor, sigma-70 family

Plasmid Coverage information

• Num covering plasmid clones: 8
• Plasmid unclonability p-value: 0.264997
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGAGCAAA ACCCGCAGTC ACAGCTCAAG CTACTTGTCA CTCGTGGTAA GGAGCAAGGC 
TATCTGACCT ATGCTGAGGT CAATGACCAT CTGCCGGAAG ATATCATCGA CTCCGATCAG 
ATCGAAGACA TCATCCAGAT GATTAATGAC ATGGGCATCC AGGTAATGGA GGAAGCGCCG 
GATGCCGATG ATCTTATGCT GGCTGAGAAC ACCGCCGATG AAGATGCCGC AGAAGCAGCA 
GCGCAGGTGC TATCCAGCGT AGAATCTGAA ATCGGGCGCA CCACCGACCC GGTACGTATG 
TATATGCGTG AAATGGGGAC CGTCGAACTC CTGACTCGTG AAGGAGAAAT CGATATCGCC 
AAACGCATCG AAGACGGCAT CAATCAGGTA CAGTGCTCCG TAGCCGAATA TCCGGAAGCG 
ATCACCTACC TGCTTGATCA GTACGATCGC GTTGAAGCCG GCGAAAGCCG TCTATCCGAT 
CTCATCACCG GCTTTGTCGA TCCCAATGCG GAAGAGGATC TGGCCGCCGC AGCGCCTGAA 
AGCACTGAAC TGGAAGGCGA AGAGATTGAA GACGAAGAAG AAGACGAAGA AGAAGACGGC 
GACAATTCCG ATAGCGATGA CGATAACAGC ATCGATCCGG AGCTGGCCCG CCAAAAATTC 
ACCGAATTGC GTGAACAATA CGAAGCGACT CGTCTGAGCA TTAAGGCGCA TGGCCGCAGC 
CATCAGTCCG CGATCGACGA GATCAACAAG TTGTCCGAAG TCTTCAAACA GTTCCGTCTG 
GTACCGAAAC AGTTCGATCT GCTGGTCAAC AGCATGCGCT CCATGATGGA TCGTGTCCGC 
ACGCAAGAAC GTTTGATCAT GAAGCTGTGC GTTGAGCAAT GCAAAATGCC GAAGAAAAAC 
TTCATGACGA TGTTCACCGG CAACGAAACT AGCATCAAGT GGTTCGAAGC TGCGCTGGCG 
ATGGGTAAAC CCTGGTCTGA AAAACTGCGT GAAGTCACCG ACGACGTTGA ACGCAGCCTG 
CTGAAACTGC AACAGATCGA GGAAGAAACC GGCCTGACTA TCGAACAAGT GAAAGACATC 
AACCGCCGTA TGTCGATTGG TGAAGCCAAA GCGCGTCGCG CCAAGAAAGA GATGGTGGAA 
GCCAACCTGC GTCTGGTTAT TTCGATTGCC AAGAAATACA CCAACCGCGG CCTTCAGTTC 
CTGGATTTGA TTCAGGAAGG CAACATTGGC CTGATGAAAG CGGTAGATAA GTTCGAATAC 
CGTCGTGGCT ACAAGTTCTC CACTTACGCC ACCTGGTGGA TTCGGCAGGC AATCACTCGT 
TCCATTGCGG ATCAGGCGCG CACCATACGT ATTCCGGTGC ATATGATTGA GACCATCAAC 
AAACTCAACC GTATTTCCCG TCAGATGCTG CAGGAAATGG GCCGTGAGCC TACCCCGGAA 
GAACTGGCCG AACGCATGCT GATGCCGGAA GACAAGATCC GCAAGGTGCT GAAAATCGCC 
AAAGAGCCGA TCTCCATGGA AACGCCGATT GGCGACGATG AAGACTCGCA TTTGGGCGAT 
TTCATTGAGG ACACCACGCT GGAGCTGCCG CTGGATTCCG CAACCTCGGA AAGCCTGCGT 
TCTGCCACCC ATGACGTGCT GGCCGGTTTG ACGGCTCGCG AAGCGAAGGT GTTACGCATG 
CGTTTCGGTA TCGATATGAA CACCGACCAC ACGCTGGAAG AAGTGGGCAA GCAGTTTGAC 
GTTACCCGTG AACGTATCCG TCAGATTGAA GCCAAGGCAC TGCGTAAACT GCGTCATCCG 
AGCCGCTCCG AAGTGCTGCG CAGCTTCCTG GACGACTAA 

 

Protein sequence

MEQNPQSQLK LLVTRGKEQG YLTYAEVNDH LPEDIIDSDQ IEDIIQMIND MGIQVMEEAP 
DADDLMLAEN TADEDAAEAA AQVLSSVESE IGRTTDPVRM YMREMGTVEL LTREGEIDIA 
KRIEDGINQV QCSVAEYPEA ITYLLDQYDR VEAGESRLSD LITGFVDPNA EEDLAAAAPE 
STELEGEEIE DEEEDEEEDG DNSDSDDDNS IDPELARQKF TELREQYEAT RLSIKAHGRS 
HQSAIDEINK LSEVFKQFRL VPKQFDLLVN SMRSMMDRVR TQERLIMKLC VEQCKMPKKN 
FMTMFTGNET SIKWFEAALA MGKPWSEKLR EVTDDVERSL LKLQQIEEET GLTIEQVKDI 
NRRMSIGEAK ARRAKKEMVE ANLRLVISIA KKYTNRGLQF LDLIQEGNIG LMKAVDKFEY 
RRGYKFSTYA TWWIRQAITR SIADQARTIR IPVHMIETIN KLNRISRQML QEMGREPTPE 
ELAERMLMPE DKIRKVLKIA KEPISMETPI GDDEDSHLGD FIEDTTLELP LDSATSESLR 
SATHDVLAGL TAREAKVLRM RFGIDMNTDH TLEEVGKQFD VTRERIRQIE AKALRKLRHP 
SRSEVLRSFL DD