Gene Dd703_3340 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDd703_3340 
Symbol 
ID8089290 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDickeya dadantii Ech703 
KingdomBacteria 
Replicon accessionNC_012880 
Strand
Start bp3910230 
End bp3912095 
Gene Length1866 bp 
Protein Length621 aa 
Translation table11 
GC content56% 
IMG OID644837416 
ProductATP-dependent RNA helicase DeaD 
Protein accessionYP_002988924 
Protein GI242240743 
COG category[J] Translation, ribosomal structure and biogenesis
[K] Transcription
[L] Replication, recombination and repair 
COG ID[COG0513] Superfamily II DNA and RNA helicases 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones16 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGCAGAGT TTGAAACCTC TTTTGCTGAT CTGGGGCTTT CCGCTCCTAT TCTTAACGCC 
CTGTCGGATA TGGGATACGA AAAACCATCC CCTATCCAGG CAGAATGTAT TCCCCATCTG
CTCAACGGTC GCGATGTGCT GGGTATGGCA CAGACCGGGA GTGGTAAAAC AGCGGCATTT
TCTCTGCCGT TGTTGAACAA TGTTAATCCA GAACTGAAGG CCCCTCAGAT TCTGGTGCTA
GCGCCTACCC GCGAACTCGC AGTACAAGTA GCCGAAGCGT GTGGCGAATT TTCCAAGCAT
ATGCATGGCG TCAACGTAGT CGCTTTGTAT GGCGGCCAGC GTTATGACGT ACAATTGCGT
GCGTTGCGTC AGGGCCCACA AGTTGTGGTG GGTACGCCCG GACGTCTGTT AGATCACCTG
AAACGCGGTA CGTTGGATCT GTCCAATCTG AGCGGCCTGG TTCTGGATGA GGCCGATGAA
ATGCTGCGCA TGGGGTTCAT TGAAGATGTA GAAAACATCA TGGCGCAGAT TCCGGATGGC
CACCAGACCG CTCTGTTCTC CGCCACCATG CCGGAAGCGA TTCGCCGCAT TACTCGTCGG
TTCATGAACG ATCCGCAGGA AGTCCGTATT CAGTCCAGCG TGACCACCCG CCCGGACATC
AGCCAGAGCT ACTGGACGGT GTACGGCATG CGCAAAAATG AAGCGCTGAT CCGTTTCCTG
GAAGCGGAAG ATTTCGACGC GGCGATTATT TTTGTGCGTA CTAAGAATGC CACGCTGGAA
GTGGCCGAAG CGCTGGAGCG CAGCGGTTAT AACAGCGCTG CATTGAACGG CGACATGAAT
CAGGCGCTGC GTGAGCAGAC GCTGGAACGC CTGAAAGATG GTCGTCTGGA TATCCTGATC
GCGACCGACG TCGCCGCGCG TGGTTTGGAT GTAGATCGTA TTAGCCTGGT GGTTAACTAC
GATATCCCGA TGGACGCCGA ATCCTATGTG CATCGTATCG GCCGTACTGG TCGCGCGGGT
CGCGCGGGTC GTGCGTTGCT GTTCGTGGAA AATCGTGAGC GTCGTTTGTT GCGCAACGTT
GAACGCACCA TGAAGTTGAC TATTCCGGAA GTGGAACTGC CGAATGCGGA ACTGCTGGGG
CAGCGCCGTC TGGCCAAGTT CGCCGCCAAG GTACAGCAAC AGTTGGAAAG CAGCGATCTG
GATCAGTATC GTGCGCTGTT GGCGAAGTTG CAGCCGTCTG CAGAACTGGA TGTGGAAACA
CTGGCTGCCG CTCTGCTGAA AATGGCGCAA GGCGAGCGTC CACTGATTCT GCCGCCGGAT
GCGCCAGCGC GTCCGCGCCG TGAATTCCGT GAGCGCGACG ATCGTTTCGA ACGTCGTGGC
GACCGTAATG ATCGGGGCCC GCGTAGTGAT GAACGCCCGG CTCGTCGTGA GCGCCGTGAT
GTCGGTGAAA TGGAACTGTA TCGTATTGAA GTGGGACGTG ATGACGGTGT AGAAGTTCGT
CATATCGTTG GCGCGATTGC CAACGAAGGG GATATCAGCA GTCGTTATAT CGGTAACATC
AAGCTGTTTG CTTCCCATTC CACCATTGAG CTGCCGAAAG GTATGCCGGG TGAACTGCTG
TCGCACTTCA CTCGCACACG CATCCTGAAC AAGCCGATGA ACATGCAATT GGTGGGCGAT
GCACAACCGC ATGAACGTCG TGAGCGTCGT GAGGGCGGCG AACGTATCGG CGGTCGTGGT
TTCAACAGCG AACGCGCCGG TAACGGTCGT GGCCGTCCGT TTGGCGGTGA GCGTCGTGAA
GGTGGCGAGC GTCGCAGTGG CAATCGTGAC GGTCAGCGTG CTCCGCGCCG TTTCAATAAT
GCCTGA
 
Protein sequence
MAEFETSFAD LGLSAPILNA LSDMGYEKPS PIQAECIPHL LNGRDVLGMA QTGSGKTAAF 
SLPLLNNVNP ELKAPQILVL APTRELAVQV AEACGEFSKH MHGVNVVALY GGQRYDVQLR
ALRQGPQVVV GTPGRLLDHL KRGTLDLSNL SGLVLDEADE MLRMGFIEDV ENIMAQIPDG
HQTALFSATM PEAIRRITRR FMNDPQEVRI QSSVTTRPDI SQSYWTVYGM RKNEALIRFL
EAEDFDAAII FVRTKNATLE VAEALERSGY NSAALNGDMN QALREQTLER LKDGRLDILI
ATDVAARGLD VDRISLVVNY DIPMDAESYV HRIGRTGRAG RAGRALLFVE NRERRLLRNV
ERTMKLTIPE VELPNAELLG QRRLAKFAAK VQQQLESSDL DQYRALLAKL QPSAELDVET
LAAALLKMAQ GERPLILPPD APARPRREFR ERDDRFERRG DRNDRGPRSD ERPARRERRD
VGEMELYRIE VGRDDGVEVR HIVGAIANEG DISSRYIGNI KLFASHSTIE LPKGMPGELL
SHFTRTRILN KPMNMQLVGD AQPHERRERR EGGERIGGRG FNSERAGNGR GRPFGGERRE
GGERRSGNRD GQRAPRRFNN A