| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dd703_3256 |
|---|
| Symbol | |
|---|
| ID | 8089202 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dickeya dadantii Ech703 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012880 |
|---|
| Strand | + |
|---|
| Start bp | 3813089 |
|---|
| End bp | 3814615 |
|---|
| Gene Length | 1527 bp |
|---|
| Protein Length | 508 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 54% |
|---|
| IMG OID | 644837328 |
|---|
| Product | oligogalacturonide transporter |
|---|
| Protein accession | YP_002988840 |
|---|
| Protein GI | 242240659 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG2211] Na+/melibiose symporter and related transporters |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGTAAAC AAATCTCTTT TAAACACACG TTCTGCTACG GCAGCGCGAA CTTGCTAGGC
AGTGGCGCCT TGGCCATTAG CGGCGCCTGG CTTATGTATT TCTACACCAC ATTTTGCGGA
TTGACGTTGG TTCAGGCGGC TTCTATTTTC TCCGTCGCCA GTATCCTTGA CGCAATCAGT
AACCCGATCA TGGGTTACAT CAGCGACAAC TTCTACAACA CCCGTATCGG GCGTACATTT
GGGCGCCGTC GCTTCTTCAT TCTATTGGGT GTTCCTTTGG TGCTGGTCTA CCCGATGCTG
TGGATGGAAG GTTTCGGCTT CTGGTACTAC ATGGCGACCT ACATTCTGTT CGAGCTGATT
TACACCTCCA TCATGGTGCC TTATGAAACG CTCGCGACCG AAATGACCAC CGATTTTAAA
ATGCGCTCCA AACTGACCGG TTCCAAAGCC ATTTTCGGTA AGGTCGCCAA TTTCCTGGCT
GCCTTTATTC CAGGTCAGTT CATCGGCATT TACGGTAAGG ATTCCGCTAC GCCGTTTTTC
TACACCGGTC TGGCCTATGG CGCCATCATG TGTGCGGCGA TGATCGCGCT GTATATGACT
TCCTGGGAGC GCTCTCCCAA CGAGGTGATG CGCGAAAACA CACAGAACCT TTTCCAGGCG
TTGAAGAAAC TCAGCATCGA CATGACCTCC ACATTCCGTT TGCGTATTTT CCGCAAACAT
CTGGGCATGT ACCTGTTCGG TTTCGGTGCT GAGTGGCTGT TCGCTTCCGC ATTTACCTAT
TTCATCGTGT TCGGCCTGCA ACAGAGCACG GCGCTGGTTT CTCAGCTCAA CAGTTTCAGC
TCTATCATGC AGTTCATCTC GACGTTTCTC TTCATCGGCA TTTGCGTGAA GATGGGTTTC
GGGCGTCCTT ATCGTCTGGC GCTGACAGTC GTTATCGTGA GCGTACTGGC CTACGCCGCG
CTCTATTTCA CTCACTGGTC GCCGGCAGTT GAAATCATCG TACTGTTTGC CATCACCGCC
GTATTCGGCC TGAGCACCGG CGGCATCTAC TACATCCCCT GGACGGTGTA CACCTTCCTG
GCTGATGTGG ACGAAGTCTT GACCGGCCGC CGCCGTGAAG GGATCTACGC CGGCGCTATG
ACCTTCGCCG GGAAAATGGT GCGTTCGGTC ATCGTGTTTG CCATGGGTTG GATCCTGAGC
CAGTTCGGGT TTATTTCCGG TAAAGCTGCA CAGCCGGAAA GCGCGGTGCT GGCGATTATC
GGCGTCTTCT CTCTGGGTGT GATTGGTCTG GCCGTTGTCG CGATTTACTT CAGTTCCCAA
ATGAAGCTGG ATCGTAAAAA CCACATGATT CTGCTGCAGG AAATCGCCCG CATCAAAGCT
GGCGGCGCCA TTGCCGATGT ACCGGCCGAG GCCCGTGCGG TAGCAGAAGA ACTCACTGGT
TGGAAATATG AACAATGCTG GGGCAACAAC CCGCTGGGCC GCTCGGCGGA ACAACCTGAG
CCGGTGATCG CCACGTCTCC CCGCTGA
|
|---|
| Protein sequence | MSKQISFKHT FCYGSANLLG SGALAISGAW LMYFYTTFCG LTLVQAASIF SVASILDAIS
NPIMGYISDN FYNTRIGRTF GRRRFFILLG VPLVLVYPML WMEGFGFWYY MATYILFELI
YTSIMVPYET LATEMTTDFK MRSKLTGSKA IFGKVANFLA AFIPGQFIGI YGKDSATPFF
YTGLAYGAIM CAAMIALYMT SWERSPNEVM RENTQNLFQA LKKLSIDMTS TFRLRIFRKH
LGMYLFGFGA EWLFASAFTY FIVFGLQQST ALVSQLNSFS SIMQFISTFL FIGICVKMGF
GRPYRLALTV VIVSVLAYAA LYFTHWSPAV EIIVLFAITA VFGLSTGGIY YIPWTVYTFL
ADVDEVLTGR RREGIYAGAM TFAGKMVRSV IVFAMGWILS QFGFISGKAA QPESAVLAII
GVFSLGVIGL AVVAIYFSSQ MKLDRKNHMI LLQEIARIKA GGAIADVPAE ARAVAEELTG
WKYEQCWGNN PLGRSAEQPE PVIATSPR
|
|---|
| |