| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dd703_3130 |
|---|
| Symbol | |
|---|
| ID | 8088427 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dickeya dadantii Ech703 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012880 |
|---|
| Strand | - |
|---|
| Start bp | 3675956 |
|---|
| End bp | 3677089 |
|---|
| Gene Length | 1134 bp |
|---|
| Protein Length | 377 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 644837205 |
|---|
| Product | efflux transporter, RND family, MFP subunit |
|---|
| Protein accession | YP_002988717 |
|---|
| Protein GI | 242240536 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0845] Membrane-fusion protein |
|---|
| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.645496 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCCGCATT CAGCTTCTCT CTCTTGGGTA ATGTCCTTCG TTATTCGATA TATGCGCCGC
CGCAGGCTGC CGACAGGCGC CATTCTGCTG GCGGCGTTTC TGCTGTCTGG GTGCGACGGT
TCGCCGGGCG AGTCCTCCGC GCCGGCGCCG CGCCCGGTTC GAACCGTGAT CGTCACGCCG
TCGACCGACG GCGAAACCCT GTCCCAGACC GGCGAGATTC GTCCTCGTGA GGAAACGGCG
CTGGGGTTCA GGCTGGATGG GCGCATGATT ACCCGCACGG TGGACATCGG GCGCCGGGTG
AACGCCGGGG ATCTTATTGC GACGCTGGAC AGCCGCGAGA GCGAAAACCA GTTGCAGAGC
GCCAACGCCG ATCTGACCAA AGCCGTCGCG GCTGAGCGGC TGGCGGAGCA AACCCTCAAC
CGGATGAAGC AACTGGCGCC GAATGGCGCC ATTTCGCGGG CGCAATTGGA TGAGGCGCGC
TCCAACTGGG CTGCGGCGGT ATCGGCGCGT GAAAGCGCCC AGGTTGGCGT GAAAAGTGCG
CAAGATAAGC TGGGATATAC CCGGTTGACT GCGCCGACGG CAGGGGTAAT CACCGCGGTT
AGCGCCAACC CCGGTCAGGT GGTCAGCGCC GGCCAGGAGG TGGTGCGCCT GGCGACGTTC
GCCGGGCTTG ATGCGGTGTT CAACGTGCCG GAGCGGCTGG TGACGGCTGG TCTAGAGGAT
CCGCCGGTCG CGGTGTCCCT GATTTCCAAC CCGGCGATAC GGGTGATGGG GCGGGTTCGG
GATGTCAGCC CGCTGGCGGA CAACGAAACC CGAACCTGGC GGGTGCGCGT GGCGCTGGAT
AACCCGCCGC CGGCGATGGC ATTGGGGGCG ACGGTGTTGG GCGAGGTCAC GTTGCCGGCC
GAGAGCCGTA TTACGCTGCC GGCGTCGGCG CTGACCCGGC AGGGCGATCA TCCCGCGGTG
TTCGTGGTGG ATCCGAAAAC GCTGGCGCTG CGTTTGCAGC CGGTGACGAT CAGCCGTTAT
CGCGCGTCGC AAATCGACGT CGCCGCCGGG TTATCGGCGG GGGATAACGT CGCGGTCGCC
GGCGTCAGCA CGCTGCGGGC CGGAGAAAAA GTGACATTGA TGGAGGCGCG CTGA
|
|---|
| Protein sequence | MPHSASLSWV MSFVIRYMRR RRLPTGAILL AAFLLSGCDG SPGESSAPAP RPVRTVIVTP
STDGETLSQT GEIRPREETA LGFRLDGRMI TRTVDIGRRV NAGDLIATLD SRESENQLQS
ANADLTKAVA AERLAEQTLN RMKQLAPNGA ISRAQLDEAR SNWAAAVSAR ESAQVGVKSA
QDKLGYTRLT APTAGVITAV SANPGQVVSA GQEVVRLATF AGLDAVFNVP ERLVTAGLED
PPVAVSLISN PAIRVMGRVR DVSPLADNET RTWRVRVALD NPPPAMALGA TVLGEVTLPA
ESRITLPASA LTRQGDHPAV FVVDPKTLAL RLQPVTISRY RASQIDVAAG LSAGDNVAVA
GVSTLRAGEK VTLMEAR
|
|---|
| |