| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dd703_3127 |
|---|
| Symbol | |
|---|
| ID | 8088424 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dickeya dadantii Ech703 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012880 |
|---|
| Strand | - |
|---|
| Start bp | 3670387 |
|---|
| End bp | 3671934 |
|---|
| Gene Length | 1548 bp |
|---|
| Protein Length | 515 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 54% |
|---|
| IMG OID | 644837202 |
|---|
| Product | methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor |
|---|
| Protein accession | YP_002988714 |
|---|
| Protein GI | 242240533 |
|---|
| COG category | [N] Cell motility
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG0840] Methyl-accepting chemotaxis protein |
|---|
| TIGRFAM ID | [TIGR00229] PAS domain S-box |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCGCAACA ACCAGCCTGT TACACAGCAT GAGTACCAGT TCGACAAAGA CTCAACGTTG
ATGTCGGTCA CTGATGTCGA TAGCCATATT ATTTATGCCA ATGACGTTTT TATTACCGTC
AGCGGTTTTG ATCCTGATGA AATCGATGGT CAGCCTCACA ATATGGTGCG CCATCCGGAT
ATGCCGGTAG AAGCGTTTGG CGATATGTGG AATACGCTTA AACAGCAGGA ACCCTGGTCG
GCGCTGGTCA AAAACCGACG TAAAAACGGC GATCATTACT GGGTGCGAGC GAATGCCGTG
CCCATCGTGC GCAACGGACG TACTACCGGG TATATGTCGG TGCGTACCCA GCCGGAGCGT
CAGGATATTG AGCAGGCGGA AACGCTTTAT CAGAAAGTTC GCTCAGGTCA GGCCAAAAAC
GTGCGTTTTC ACAAAGGAAT TGTGGTGAAA ACCGGTGTGT TCGGGATGTT TTCCCGGGTT
CGGATTATGC CGATGCGCTG GCGTCTGCGC AGTGTGATGT TGTTGACCCT GCTGGCGAGT
TTTATCGCCT ATTTCGCGAT TCACCGCGAT ATCGATGCAG ATTTTATCTC TTCCAGCCTC
TTCAGTGTCG TGCTGTTGTT GGTGCTTGAT GTGCTGTTGG AGTGGCAGTT GGTCAAACCG
ATTGAAAAAC TGAAACGGCA GGCGTTGGAT ATCGCCACCG GCAATGCAAC CACCCTCCAT
TATGATGAGC GCACCGATGA AATCGGTACG ATTCAACGCT CTGTGGGTCA ACTGGGGTTG
ATGTTTCGCT GGCTGGTGGA TGATATCAGC CTGCAGGTCA GTAATATTCG TCATGCCAGT
GATGATTTGG CCAGCGGCAG CGAGGAGATG AGCCGCCATG TGGAACAGAC GGCGGCTAAC
GTGCAACAAA CGGCGGCGGC CATGAACGAA ATCAATACCA CGGTACAGAC CAACAATGCG
ACGACGAGCG AAGCCAGCAA GTTGGCGTCC ACGGCCAGTC AGGCGGCGCA GGTCGGCGGT
AAGGTGATTG GGCAGATGGA ACATACCATG GATAGCATCG TGGCCAGTTC GGAGAAAATC
GCCGGTATCA CCTCCATTAT CGATAACATT GCGTTCCAGA CTAATATCCT GGCGTTGAAT
GCGGCGGTAG AGGCCGCCCG GGCCGGCGAG CAAGGCAAAG GGTTCGCCGT GGTTGCCGGT
GAGGTGCGTA ATCTGGCGCA ACGCAGCGCC AGCGCCGCGC ATGAAATCAA AGAGCTGATT
GACGTCAGCG TCGACAAGGT GCGGATCGGT TCGCAGCAGG CGAAGGAGGC TGGGGAAAGT
ACGCACGGGA TTGTGATGCA AGTAAATAAT GTCAGCGAAC TGATCGCGCA TATTACGGAG
TCGACACGCG AACAAGGTGT TGGGTTGAGT GAAATTGACC GGGCGGTGGA AGATCTGGAG
CGGATCATGC AGCAAAACGC CACGCAGGTG ACGAACAGCG CTCATGCCTC CGAACAACTG
AGTATGCAGG CCCATCGTCT GGAACAGGCG TTGCACGTCT TTCGGTGA
|
|---|
| Protein sequence | MRNNQPVTQH EYQFDKDSTL MSVTDVDSHI IYANDVFITV SGFDPDEIDG QPHNMVRHPD
MPVEAFGDMW NTLKQQEPWS ALVKNRRKNG DHYWVRANAV PIVRNGRTTG YMSVRTQPER
QDIEQAETLY QKVRSGQAKN VRFHKGIVVK TGVFGMFSRV RIMPMRWRLR SVMLLTLLAS
FIAYFAIHRD IDADFISSSL FSVVLLLVLD VLLEWQLVKP IEKLKRQALD IATGNATTLH
YDERTDEIGT IQRSVGQLGL MFRWLVDDIS LQVSNIRHAS DDLASGSEEM SRHVEQTAAN
VQQTAAAMNE INTTVQTNNA TTSEASKLAS TASQAAQVGG KVIGQMEHTM DSIVASSEKI
AGITSIIDNI AFQTNILALN AAVEAARAGE QGKGFAVVAG EVRNLAQRSA SAAHEIKELI
DVSVDKVRIG SQQAKEAGES THGIVMQVNN VSELIAHITE STREQGVGLS EIDRAVEDLE
RIMQQNATQV TNSAHASEQL SMQAHRLEQA LHVFR
|
|---|
| |