| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dd703_3046 |
|---|
| Symbol | |
|---|
| ID | 8089882 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dickeya dadantii Ech703 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012880 |
|---|
| Strand | - |
|---|
| Start bp | 3543250 |
|---|
| End bp | 3546234 |
|---|
| Gene Length | 2985 bp |
|---|
| Protein Length | 994 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 52% |
|---|
| IMG OID | 644837129 |
|---|
| Product | Type III site-specific deoxyribonuclease |
|---|
| Protein accession | YP_002988641 |
|---|
| Protein GI | 242240460 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG3587] Restriction endonuclease |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAACAGTC ATTCTCAAAA TACGGGCTTT CAATTTGATT CGTATCAGCA ATATCAGCTT
GATGCCATCA ACGCCGTGGT GGATTTGTTC GATGGTCAGC CAAAGGATGC CGACAAGATC
GCGATTGCCT TGCGTGGCAA TGTTGCTAGC CGGGAAGGTG AACTGGATTT AGGCATCGAA
CAGGAGATCG GCGCTATCGG CAATAATCTG GTACTGGATG AAGGCACTAT CCTTGCTAAC
TTACAAACGG TGCAGGATCG CAACGGGCTG GAGGTCAGCG AAAAGCTGGT TGATGATAAA
CTGGATTTCG ACATCGAAAT GGAGACCGGT ACGGGCAAAA CTTACGTTTA TCTGCGCACT
GTTTTCGAAC TGGCCAAGAA ATATGGTTTC ACCAAGTTTA TCGTCCTCGT TCCCAGCGTC
GCCATCCGTG AGGGGGTCAA CACCAGCATT CGTCTGATGC GGGAGCACTT CCGCAGTCTC
TATCCGGCGC AGCCTTTCGA TGCGAATGTT TACAGCGGCG ACAAGGCTGA GGAAGTACAG
GCCTTTGCTA CTGCGACCAA CGTGCAAATA CTGGTGATGA CGATCGATGC GATACGCGGT
AACAAGAATA CGCGCATCAT TCACCAGCAG CGCGACAAAC TCAATGGCTT GCGTCCGCTG
GATTACCTGA AAGGCACGCA TCCCGTGGTG ATCATGGATG AACCACAGAA TATGGAGTCG
CTACTATCGC AGTCGGCAGT GGGCGAGCTC GATCCCGTAT TTACACTGCG CTACTCGGCC
ACGCACAAGC AACGACGAAA TCTGGTCTAC CGGCTCGATC CGGTTGACGC GCACGATCTC
GGTTTGGTGA AGCAGATCGT TGTGGCTGAG GTCGCACAGC ACGGTGCGGA CGTTGCGCCA
TACGTCAAGT TGCTCGAAGT GAAAGACACG AAAGCCGCGA AACTTGAACT GGCTTGTCGC
AAGGCCGATG GATCTATCGC GCGTCGTAGC AAAAAGGTCA AACCGCATCA GGAATTGTCA
GACGTCAGTG GAAATCCTGC TTATACTGGC TGGCGTATTA ATGCTTTAAG CATCGCCGCG
TTCGGTGACC CGGCCAGTAT TGAACTGATG CCGAATGGGA ATCTGCTGCA CGAAGGTGAG
TCCTTGGGGG GCGCCACGGG CGCGATTTAC AAGGAAATGA TTAGGGAAAC CGTGCGTGAG
CATTTGCGCA AGGAAGCGAT GTTGCGCCCG AAGGGGATTA AAGTATTGAG TCTGTTTTTC
GTCGACAAGG TGGCGAGTTT TCTCGGCGAC GGGGTGAACA ACGAAGACGC AAACGGCGAG
TTCACGAAGT GGTTCGATGA GGTGTTCAGG GAAGAGCGTA GCAAGTCTGG CGTCTACCAA
ACATTGCTGC CGCAGGATCC TTGCGAATTA CGGCGGGCGT ATTTTTCCCA ACTGAAAACA
CGTGTTGGCA CGACCTTTGT GGATTCGTCA GGCACAACAG CTAAAGATGA CGATGCCTAC
AAACTCATTA TGCAAGACAA GCAGCGTCTG CTGGACGACG CAGAACCAGT ACGCTTCATC
TTTAGCCATT CCGCACTGCG CGAGGGCTGG GACAACCCTA ACGTGTTTCA GATTTGTACG
CTGCGTGAAA TGGGCGCGGA AACGGAACGT CGGCAAACCT TGGGACGTGG TCTGCGCCTG
CCAGTGGCGA AAACAGTAAA AGGCTATGAG CGTGTTTCCG ATCGTAGCGT TGCACAACTC
ACGGTAGTTG CTAACGAGTC TTATGCTACG TTCGCTCAGA ACCTGCAAGC TGAATACAGG
GAGGCGGGGG TAGCCATCGG ACAGGTACGC CCCAATGAAT TTGCCAAGTT GATGAAACGG
GATCCTCATG GTGCGATGAC CGATGACATG CTGGGGTTCA GGATGTCTTC TGCCATATTC
AAGCATCTGG AAAACTCAGG ATTCATCAAG GATGGTAAGA CAACTTCCAT GTTTCTGCCG
GATGCAGCAG GATTCTCACT ACATTTGCCG GCTGAGTTCA GGCCCTACGA AACAGATATT
ATCCACTGCA TTCTTAATGC GGGTATTGAG AAATATGTGA AGCCCGTAAG TGCGCGGGCC
AAACGGAAAT TCAACAAAGA GCTCTACGCC TCGCCGGATT TTGAGAGGCT TTGGAGCGCT
ATCAGCCAGA AAACCACTTA TCGGGTGACA GTTAAACACC CTATGCTGGT TGAGACGTGC
ATAAAGGCGA TCAAGGCTGA ACCCAAAATT CAGCCGTTAC GTATTGATGT CACTCGTGCT
GGTGTCAGGG TGCTACGTGG CGGCACGCAA GGGCTAGAAC TGGGGGCACG AACTGTCGAT
CTCAAAGGCA GTTATGACCT GCCGGACATT ATCGGTGAGT TGCAGCAAGG TACGTCTCTT
ACACGCAAGA CGCTGGTGGA TATTCTCATT GGTAGCGGAA GATTGGATGA GTTCATTGCC
AATCCGAACG ACTTCATGGC GATGGTACGC CGTTGCGTAG AGGGTGAACT ACAGCGCGTC
ATTGTTGAAG GCGTTCAGTA TGAAAAGATC GGCGGCTCCA TCTATGAACT CCGCGAGTTG
CAAGCCGATG GCCTTGCCGA AAAGGATTTC TTCAAAGAGC ATTTGTACCG CGTCGAACAC
CCTGAGAAAA CCGATTTTGA TTACGTCGTG TTTGATGGCG GGCCGGACAG CCCGGAGCGA
AAGTTCGCCG AGTTTCTCGA TCACCGCGAG GATATCAGGC TGTTTATGAA GCTTCCGCCA
AGATTCCAGA TCGACACGCC GGTTGGCCCT TATAACCCCG ACTGGGCCAT CATCAAATCC
GAAGAAGGCG AAGACCGCAT CTATATGGTT CGCGAAACCA AGAGCACCAT GGATGAACAA
AAAAGGAGAC CCTCAGAAAA TGCCAAAATC AAGTCTGCCG AGGCACACTT CAGAGAAATT
GGCATCGAGT ATGCGGTTTC CGTACCTGAA CAGTGGAATA TCTAG
|
|---|
| Protein sequence | MNSHSQNTGF QFDSYQQYQL DAINAVVDLF DGQPKDADKI AIALRGNVAS REGELDLGIE
QEIGAIGNNL VLDEGTILAN LQTVQDRNGL EVSEKLVDDK LDFDIEMETG TGKTYVYLRT
VFELAKKYGF TKFIVLVPSV AIREGVNTSI RLMREHFRSL YPAQPFDANV YSGDKAEEVQ
AFATATNVQI LVMTIDAIRG NKNTRIIHQQ RDKLNGLRPL DYLKGTHPVV IMDEPQNMES
LLSQSAVGEL DPVFTLRYSA THKQRRNLVY RLDPVDAHDL GLVKQIVVAE VAQHGADVAP
YVKLLEVKDT KAAKLELACR KADGSIARRS KKVKPHQELS DVSGNPAYTG WRINALSIAA
FGDPASIELM PNGNLLHEGE SLGGATGAIY KEMIRETVRE HLRKEAMLRP KGIKVLSLFF
VDKVASFLGD GVNNEDANGE FTKWFDEVFR EERSKSGVYQ TLLPQDPCEL RRAYFSQLKT
RVGTTFVDSS GTTAKDDDAY KLIMQDKQRL LDDAEPVRFI FSHSALREGW DNPNVFQICT
LREMGAETER RQTLGRGLRL PVAKTVKGYE RVSDRSVAQL TVVANESYAT FAQNLQAEYR
EAGVAIGQVR PNEFAKLMKR DPHGAMTDDM LGFRMSSAIF KHLENSGFIK DGKTTSMFLP
DAAGFSLHLP AEFRPYETDI IHCILNAGIE KYVKPVSARA KRKFNKELYA SPDFERLWSA
ISQKTTYRVT VKHPMLVETC IKAIKAEPKI QPLRIDVTRA GVRVLRGGTQ GLELGARTVD
LKGSYDLPDI IGELQQGTSL TRKTLVDILI GSGRLDEFIA NPNDFMAMVR RCVEGELQRV
IVEGVQYEKI GGSIYELREL QADGLAEKDF FKEHLYRVEH PEKTDFDYVV FDGGPDSPER
KFAEFLDHRE DIRLFMKLPP RFQIDTPVGP YNPDWAIIKS EEGEDRIYMV RETKSTMDEQ
KRRPSENAKI KSAEAHFREI GIEYAVSVPE QWNI
|
|---|
| |