Gene Dd703_3006 details

Gene Information

• Locus tag: Dd703_3006
• Symbol: recD
• ID: 8089841
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Dickeya dadantii Ech703
• Kingdom: Bacteria
• Replicon accession: NC_012880
• Strand: -
• Start bp: 3496810
• End bp: 3498660
• Gene Length: 1851 bp
• Protein Length: 616 aa
• Translation table: 11
• GC content: 59%
• IMG OID: 644837090
• Product: exonuclease V subunit alpha
• Protein accession: YP_002988603
• Protein GI: 242240422
• COG category: [L] Replication, recombination and repair
• COG ID: [COG0507] ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member
• TIGRFAM ID: [TIGR01447] exodeoxyribonuclease V, alpha subunit

Plasmid Coverage information

• Num covering plasmid clones: 16
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGCTTGAGT TACTGCTTGA GGCTCAGCGC AGGCATCTGT TGCGCCCGCT GGATGTGCAG 
TTTGCCCACA TGCTGGCAGG GGATGAACCC TACCTGCTGC TGGCGGCGGC ATGTCTGAGC 
AATCATGCCG GGGCGGGGCA TGTCTGCCTG CCTTTGGAGC AGTTACAGGG TGATCGTTTG 
TTTGACGGAC GTGACCCTGT GTTGGCTCGC CAGATAATGC AGTTGCTCGG CTCTCCAAAT 
GTGGAGCGCT GGCGTAGCGA GTTGCAGCGG TGTGAGCCGG TCGACGATGG TCATCGGCCA 
ACGCCGTTGG TGCTGGAGAG GGATATGCTC TATCTACAGC GCAGTTGGCG GAACGAATGT 
CAGGTAGCGC ATTTTATCGC CAACGGGCAA CTGACGACGG ATATGGATGA GCGCCATATC 
CGTCAGGTAC TAGACACTCT GTTCCCGACG GTGGAAAAAG AGGTCGACTG GCAGAAGATT 
GCGGCTGCCG TGGCGTTGAC CAGCCGCATG GCGGTGATTT CCGGCGGTCC CGGTACAGGG 
AAAACCACTA CGGTCGCCAA ACTGCTGGCG GCGCTGATTG CGTTGCGTGG CGACGCCCAG 
CCGTTGCGTA TCCAACTGGC TGCGCCGACC GGCAAGGCCG CCGCCCGTCT GACGGAATCT 
CTGGGCGTTG CGCTTCGCCA ATTGACGCTG AGCGAGGCGC AGTTGCGCAG TTTTCCGCAA 
GCCGCATGCA CATTGCATCG TTTGCTGGGT GCGATGCCGG ATAGCCAGCA GTTGCGTCAT 
CATCGTGATA ATCCCTTGCA TCTTGATCTG TTGGTGGTGG ATGAAGCCTC AATGGTGGAT 
TTACCGATGA TGGCGCATGT GATGGCGGCT CTGCCTGCGC ATGCCCGCGT TATCTTTCTG 
GGGGATCGCG ATCAGTTGGC GTCCGTGGAG GCGGGTGCGG TGCTGGGCGA TATCTGTCAT 
TTCACCGGGC AGGGGTATAG CCCGGCTCGT ACCGAACAGC TACAACGTTT GACCGGGTGT 
GCGTTGCCGC CGCCATCGCC AAAGGCATCC AGCGTGGCGG ATAGCATCTG CCTGTTGCGC 
AAAAGCTACC GTTTTGCCGC ATCGTCAGGC ATCGGGTTGC TGGCGCAGGC GGTGAATCAG 
GGAGATGAAC GGCGGGTGAA AGACGTTTGG CACGGCGGCT ATAGCGACGT CGGATGTCAT 
CCGTTGCGGG AAGCGTCGGA TTACCAACAG TTGCTGACGC TGGCGGTGAC GGAGTATCGA 
CGTTATCTAC AGGCGATCGA CGACGGCGCC GAACCGGCGG TGGTGCTGCG CGCGTTCCAG 
CAATTTCGCC TGCTTTGCGC TCTGCGGGAA GGGCCGTTCG GCGTAGAGGG GTTGAATCAG 
GGTATCGAGC AGGCATTGCG CAGCGCCAGG TTGATCCCCG CGTTACCCGC CAATGGCTCT 
CGTTGGTACG TCGGAAGGCC GGTGATGATC GCGCGTAATG ACACTATTCT GGGGCTGTTT 
AACGGTGATA TCGGTATCGC ATTGCTGAAT GCGCAGGGTG AACTGCGGGT CTGCTTCCCA 
TTGCCGGATG GCAGCGTCAA ACCGGTGCCG CCCAGCCGTC TGCCACCGCA TGAAACTGCG 
TTTGTCATGA CGGTGCATAA ATCTCAAGGG TCTGAGTTTG AACATACGGC ATTGGTGTTG 
CCCAACATGA TGCTGCCTCT GCTGACCCGA GAATTGATTT ACACCGCAAT AACTCGCGCA 
CGCCAGCAGT TGTCGATATT TGCCGACGAA GACATTCTGT GTCAGTCCGT GTGCGCCGCT 
ACCCGGCGTT ATAGCGGCCT GGCGCAGCGT ATTCTGATGC TGGCGCAGTA G 

 

Protein sequence

MLELLLEAQR RHLLRPLDVQ FAHMLAGDEP YLLLAAACLS NHAGAGHVCL PLEQLQGDRL 
FDGRDPVLAR QIMQLLGSPN VERWRSELQR CEPVDDGHRP TPLVLERDML YLQRSWRNEC 
QVAHFIANGQ LTTDMDERHI RQVLDTLFPT VEKEVDWQKI AAAVALTSRM AVISGGPGTG 
KTTTVAKLLA ALIALRGDAQ PLRIQLAAPT GKAAARLTES LGVALRQLTL SEAQLRSFPQ 
AACTLHRLLG AMPDSQQLRH HRDNPLHLDL LVVDEASMVD LPMMAHVMAA LPAHARVIFL 
GDRDQLASVE AGAVLGDICH FTGQGYSPAR TEQLQRLTGC ALPPPSPKAS SVADSICLLR 
KSYRFAASSG IGLLAQAVNQ GDERRVKDVW HGGYSDVGCH PLREASDYQQ LLTLAVTEYR 
RYLQAIDDGA EPAVVLRAFQ QFRLLCALRE GPFGVEGLNQ GIEQALRSAR LIPALPANGS 
RWYVGRPVMI ARNDTILGLF NGDIGIALLN AQGELRVCFP LPDGSVKPVP PSRLPPHETA 
FVMTVHKSQG SEFEHTALVL PNMMLPLLTR ELIYTAITRA RQQLSIFADE DILCQSVCAA 
TRRYSGLAQR ILMLAQ