Gene Dd703_2904 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDd703_2904 
SymbolsecD 
ID8089737 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameDickeya dadantii Ech703 
KingdomBacteria 
Replicon accessionNC_012880 
Strand
Start bp3386379 
End bp3388193 
Gene Length1815 bp 
Protein Length604 aa 
Translation table11 
GC content55% 
IMG OID644836986 
Productpreprotein translocase subunit SecD 
Protein accessionYP_002988501 
Protein GI242240320 
COG category[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG0342] Preprotein translocase subunit SecD 
TIGRFAM ID[TIGR00916] protein-export membrane protein, SecD/SecF family
[TIGR01129] protein-export membrane protein SecD 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.392926 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCTGATCG TGACGATTGT CGTTGGTCTG CTCTACGCAC TTCCTAACCT TTATGGTGAG 
GATCCGGCTG TTCAGGTCAC TGGCGCGCGG GGAACCGCCG CCAGTGAGAG TACGCTGGTC
CAGATCCAGA GCGTTTTAAA AGAACAAAAT ATTTCCAGCA AATCCATTGT GCTGGAAAAT
GGCGCCATTT TGGCGCGTTT TTCTACTCCT GATATCCAAT TGCGGGCACG CGAAGCGCTG
CTCAATGCAT TGGGCGAGAA ATACGTTGTG GCGCTTAACC TTGCGCCGTC AACCCCCCAC
TGGCTGAGAA TGCTCGGTGC GGAACCGATG AAGCTGGGCC TCGACCTGCG CGGCGGCGTA
CATTTCCTGA TGGAAGTGGA TATGGAAACC GCGTTGAGCA AATTGCAGGA ACAGACCATG
GATTCTCTGC GCAGCGATCT GCGTGAGAAA AATGTTCAAT ACGCCTCTAT CCGTAAGTCC
GATAACTATG GCGTAGAAAT CGTTTTCCGT GATGGCCAAC AGCGTGATCA GTCGGTTGAT
TATCTGACAT CCCGTCATCG TGATCTGGTC ATTACTTCCA GCGGCAGCGA CACGTTGCGT
GCGGTGATGA GCGATGCCCG GTTGCGCGAA GCCCGCGAAT ATGCCGTTCA GCAGAACATC
AATATCCTGC GTAACCGTGT GAACCAACTG GGCGTGGCCG AACCGCTGGT GCAACGTCAG
GGTGCTGACC GCATCGTGGT TGAACTGCCG GGGATTCAGG ATACCGCGCG CGCCAAGGAA
ATTCTGGGTG CCACCGCGAC GCTGGAATTC CGTCTGGTGA ACAGCAACGT CGATCCTGCT
GCGTTAGCCA GCGGCCGCGT ACCCGGCGAT ACCGAAGTGA AGAACATGCG TGACGGCGGG
CCGATAGCGC TGTACAAACG TGTCATTCTG ACCGGCGATC ATATCACCGA CTCCACCTCC
GGCAACGATG AGTACAATCG CCCGCAGGTG AATATCTCGC TGGATAGCGC CGGCGGCAAT
ATGATGCTCA ACTTCACTAA GGTCAACATC GGCAAGCCGA TGGCAACCCT GTTTGTGGAG
TATAAGGACA GCGGTAAGAA AGGCGCCAAC GGCCGTGCCA TTCTGGAGAA ACAGGAAGAG
GTGATTAACG TCGCCACAAT CCAGTCTCCC TTGGGCAACA GTTTCCGGAT TACCGGCATC
GACAACCCGA ACGAAGCTCG CCAATTGGCG CTGTTGCTGC GTGCCGGTGC ATTGATCGCG
CCGATTCAGA TCGTGGAAGA GCGTACCATC GGCCCAACGC TGGGGATGCA GAATATCACC
CAAGGGTTGG AGGCCTGTCT GGCCGGCCTT GCCGTGTCTA TCCTGTTCAT GATCTTCTTC
TACAAGAAGT TCGGCATGAT CGCGACCTCT GCCCTGCTGT CGAACCTGGT GTTGGTGGTC
GGCATTATGT CGCTGTTGCC GGGCGCTACG CTGACCATGC CGGGGATTGC GGGGATTGTG
TTAACCCTTG CGGTAGCGGT GGATGCCAAC GTACTGATTA ACGAGCGTAT TAAAGAAGAA
CTGAGTAACG GGCGTACTGT TCAGCAGGCA ATTGACGAAG GCTACAAAGG CGCCTTCAGC
TCCATCTTCG ATGCGAACGT CACGACGCTG ATCAAGGTCA TTATCCTGTA CGCGATCGGT
ACTGGTTCGA TTAAAGGATT TGCGATTACG ACCGGTATCG GCGTGGCGAC ATCCATGTTC
ACTGCGATCG TGGGTACCCG TGCCATCGTA AACCTGCTGT ACGGCGGCAA ACGCATCAAA
AAGCTGTCTA TCTGA
 
Protein sequence
MLIVTIVVGL LYALPNLYGE DPAVQVTGAR GTAASESTLV QIQSVLKEQN ISSKSIVLEN 
GAILARFSTP DIQLRAREAL LNALGEKYVV ALNLAPSTPH WLRMLGAEPM KLGLDLRGGV
HFLMEVDMET ALSKLQEQTM DSLRSDLREK NVQYASIRKS DNYGVEIVFR DGQQRDQSVD
YLTSRHRDLV ITSSGSDTLR AVMSDARLRE AREYAVQQNI NILRNRVNQL GVAEPLVQRQ
GADRIVVELP GIQDTARAKE ILGATATLEF RLVNSNVDPA ALASGRVPGD TEVKNMRDGG
PIALYKRVIL TGDHITDSTS GNDEYNRPQV NISLDSAGGN MMLNFTKVNI GKPMATLFVE
YKDSGKKGAN GRAILEKQEE VINVATIQSP LGNSFRITGI DNPNEARQLA LLLRAGALIA
PIQIVEERTI GPTLGMQNIT QGLEACLAGL AVSILFMIFF YKKFGMIATS ALLSNLVLVV
GIMSLLPGAT LTMPGIAGIV LTLAVAVDAN VLINERIKEE LSNGRTVQQA IDEGYKGAFS
SIFDANVTTL IKVIILYAIG TGSIKGFAIT TGIGVATSMF TAIVGTRAIV NLLYGGKRIK
KLSI