Gene Dd703_2894 details

Gene Information

• Locus tag: Dd703_2894
• ID: 8089727
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Dickeya dadantii Ech703
• Kingdom: Bacteria
• Replicon accession: NC_012880
• Strand: +
• Start bp: 3375016
• End bp: 3376887
• Gene Length: 1872 bp
• Protein Length: 623 aa
• Translation table: 11
• GC content: 58%
• IMG OID: 644836976
• Product: 1-deoxy-D-xylulose-5-phosphate synthase
• Protein accession: YP_002988491
• Protein GI: 242240310
• COG category: [H] Coenzyme transport and metabolism; [I] Lipid transport and metabolism
• COG ID: [COG1154] Deoxyxylulose-5-phosphate synthase
• TIGRFAM ID: [TIGR00204] 1-deoxy-D-xylulose-5-phosphate synthase

Plasmid Coverage information

• Num covering plasmid clones: 14
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGATCTTTG ATATTGCGAA ATACCCTACA CTGGCACTGG TGGAAAATCC TGACGATTTA 
CGCCTGTTGC CCCGGGACAG CCTGCCGAAA CTGTGTGACG AACTGAGACA GTACCTGCTG 
GATAGCGTTA GTCGCTCAAG CGGACATTTC GCATCGGGCC TGGGTACGGT TGAACTGACG 
GTGGCGTTGC ATTACGTCTA TAACACGCCG TTCGATCACC TGGTATGGGA TGTCGGTCAT 
CAGGCTTATC CGCACAAAAT CCTGACCGGG CGTCGCGACC GGATCGCCAC CATTCGTCAG 
AAAGACGGCC TGCATCCGTT CCCGTGGCGT GGAGAAAGCG AATACGACGT ACTGAGCGTC 
GGCCACTCAT CCACCTCCAT CAGTGCCGGT CTCGGCATGG CGGTGGCCGC CGAGCGCGAA 
GGTAAAGGAC GGCGTACCGT ATGTGTCATC GGCGACGGCG CGATCACCGC CGGCATGGCG 
TTCGAAGCCA TGAACCATGC GGGCGATATT CGGCCGGACA TGCTGGTGGT ACTCAACGAC 
AACGAAATGT CGATTTCTGA AAACGTCGGC GCACTGAACA ACCACCTGGC GCAATTGCTC 
TCCGGCAAGC TTTACTCCAC TCTGCGCGAA GGCGGTAAGA AAGTGCTGTC GGGGTTGCCG 
CCCATCAAAG AGCTGGTCAA ACGCACCGAG GAACACCTCA AAGGTATGGT TGTTCCAGGT 
ACGCTATTTG AAGAACTCGG TTTTAACTAT ATCGGCCCGG TGGATGGGCA TGATGTGCAG 
GCGCTGGCGC AAACGCTCAA AAATATGCGC AGCCTCAAAG GGCCGCAATT GCTGCACATC 
ATGACCAAGA AAGGCAAAGG CTACGCCCCC GCCGAACAGG ATCCGATCAG TTGGCACGCC 
GTGCCTAAAT TCGATCCAGC CAGCGGTACT CTGCCTAAAA GCAAGGAAGG GGCGCTGCCC 
ACCTACTCTG CCGTCTTTGG TCAATGGCTG ACGGAAACCG CCGCAGGCGA CAGCCGGCTG 
ATGGCGATTA CCCCTGCCAT GCGTGAAGGC TCCGGCATGG TGGCTTTCTC CCGCCAATAC 
CCGCAGCAAT ATTTCGATGT GGCTATCGCC GAGCAGCACG CCGTCACCTT CGCCGCTGGG 
CTTGCTGTTG GCGGTTATCG TCCGGTCGTG GCAATTTACT CGACTTTTCT GCAACGCGCT 
TATGATCAAG TGATTCACGA CGTCGCCATC CAGAATCTGC CGGTACTGTT CGCTATCGAT 
CGCGGCGGTA TCGTCGGCGC CGACGGGCAA ACCCATCAGG GTGCATTTGA TCTCTCTTTC 
CTGAGATGTA TCCCTAACAT GGTGATCATG ACGCCCAGTG ATGAAAACGA GTGCCGTCTG 
ATGTTGCATA CCGGCTACCA CTATCCACAC GGCCCGGTCG CGGTGCGTTA CCCGCGTGGC 
ACCGCCGTGG GTGTACCGTT AACGCCGCTG GAAACGCTGC CGATCGGCGA AGGCGTGATG 
CGCCGTCAGG GAGAAAATAT CGCCATCCTG AATTTCGGCA CACTGATGCC GGAAGCGCGT 
CAAGCGGCGG AAGCGCTTAA TGCCACACTG GTTGACATGC GTTTCGTGAA ACCATTGGAT 
GAAGCGTTGA TCCTGTCGTT GGCAGGCACG CACCAGGCAC TAGTGACCGT GGAAGAAAAT 
GCCGTCATGG GCGGCGCGGG GAGTGGCGTC AATGAACTGC TGATGGCGCA CCGGGCGCTG 
GTTCCCGTAT TGAATCTGGG CCTGCCGGAC TATTTTATTC CACAAGGCAC ACAGGACGAA 
ATCCGAACAC AATTGGGGCT GGACGCCGTG GGTATTGAGC GCCGCATCCG TCAGTGGCTG 
GCTGATGAGT GA 

 

Protein sequence

MIFDIAKYPT LALVENPDDL RLLPRDSLPK LCDELRQYLL DSVSRSSGHF ASGLGTVELT 
VALHYVYNTP FDHLVWDVGH QAYPHKILTG RRDRIATIRQ KDGLHPFPWR GESEYDVLSV 
GHSSTSISAG LGMAVAAERE GKGRRTVCVI GDGAITAGMA FEAMNHAGDI RPDMLVVLND 
NEMSISENVG ALNNHLAQLL SGKLYSTLRE GGKKVLSGLP PIKELVKRTE EHLKGMVVPG 
TLFEELGFNY IGPVDGHDVQ ALAQTLKNMR SLKGPQLLHI MTKKGKGYAP AEQDPISWHA 
VPKFDPASGT LPKSKEGALP TYSAVFGQWL TETAAGDSRL MAITPAMREG SGMVAFSRQY 
PQQYFDVAIA EQHAVTFAAG LAVGGYRPVV AIYSTFLQRA YDQVIHDVAI QNLPVLFAID 
RGGIVGADGQ THQGAFDLSF LRCIPNMVIM TPSDENECRL MLHTGYHYPH GPVAVRYPRG 
TAVGVPLTPL ETLPIGEGVM RRQGENIAIL NFGTLMPEAR QAAEALNATL VDMRFVKPLD 
EALILSLAGT HQALVTVEEN AVMGGAGSGV NELLMAHRAL VPVLNLGLPD YFIPQGTQDE 
IRTQLGLDAV GIERRIRQWL ADE