| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dd703_2519 |
|---|
| Symbol | |
|---|
| ID | 8086909 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dickeya dadantii Ech703 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012880 |
|---|
| Strand | - |
|---|
| Start bp | 2955857 |
|---|
| End bp | 2958907 |
|---|
| Gene Length | 3051 bp |
|---|
| Protein Length | 1016 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 56% |
|---|
| IMG OID | 644836589 |
|---|
| Product | formate dehydrogenase, alpha subunit |
|---|
| Protein accession | YP_002988118 |
|---|
| Protein GI | 242239937 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG0243] Anaerobic dehydrogenases, typically selenocysteine-containing |
|---|
| TIGRFAM ID | [TIGR01409] Tat (twin-arginine translocation) pathway signal sequence
[TIGR01553] formate dehydrogenase, alpha subunit, proteobacterial-type |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCAGGTCA GCAGAAGACA ATTTTTCAAA ATATGTGCGG GTGGTATGGC CGGTACCACG
GTCACTGCCC TGGGCTTTTC TCCCAGCGTT GCGTTAGCTG AGACGCGGCA ATATAAATTA
CTGCGCGCCA AAGAGACGCG AAATAACTGC ACGTACTGTT CCGTTGGGTG CGGCATTTTA
ATGTACGGCC TGGGCGACGG CGCCAAAAAC GCCAAATCTT CCATTTATCA TATCGAAGGG
GATCCGGATC ATCCGGTTAG CCGAGGTGCG CTGTGCCCTA AAGGCGCCGG TCTGGTGGAT
TTCATTCATA GCGATCAGCG GCTGCTGTAT CCGGAATATC GCGCGCCGGG CGCCGATAAG
TGGCAGCGCA TCAGTTGGGA AGAGGCGTTG GATCGTATCG CGCGTCTCAT GAAAAAAGAC
CGCGACGCCA ACTTTGTGGA AAAAAACAGC GCCGGAGTCA CGGTTAACCG CTGGCTGACT
ACTGGGATGC TGTGTTCTTC GGCGGCCAGC AATGAAACCG GTATTCTTGA TCAGAAGTTC
GCGCGTGCGT TGGGTATGAT CGGTATCGAC ACTCAAGCTC GTCTGTGTCA CGGCCCGACA
GTGGCTGCGT TGGCGCCCAC CTTTGGCCGT GGCGCCATGA CCAACAACTG GGTGGATATC
AAGAATGCCA ACGTCGTGTT GGTGATGGGC GGCAACCCGG CGGAAGCGCA CCCGGTAGGA
TTCAAATGGG CGGTCGAAGC CAAAATTCAT AATGGCGCCA AACTGATTGT GGTTGACCCG
CGTTTTAACC GTTCAGCTTC CGTCGCGGAT CTGTATTCGC CGATTCGCGC CGGCTCCGAT
ATTACCTTTC TGTTAGGGGT CGTGAATTAC CTGCTGACCC ACGACAAGAT CCAGATGCCG
TATGTGAAGG CCTACACCAA CGCCAGCCTG ATCGTGCGTG ACGACTACAG TTTCGATGAA
GGTATCTTCA GCGGCTATAG CGAAAAAGAG CACCGCTATG ATCGTACCTC ATGGCAGTAC
GCGCTGGATG AAAACGGCTT CGCCAAACGT GATTTAACCT TGAGCGATCC GCGTTGCGTG
TGGAATCTGC TGAAGGAGCA CGTCAGTCGT TATACGCCGG ATCTGGTGAC ATCGGTGTGC
GGTACGCCGA AACAGGACTT CCTCACTATT TGCGATCTGC TGGGCTCAAC CAGCGTTCCT
GATCGTACCG CGACCATTAT GTATGCGCTG GGATGGACTC AGCACACTGC GGGCGCGCAG
ATTATTCGCA CCGCGGCCAT GATCCAGCTG TTGTTGGGCA ACGTCGGTAT GGCGGGGGGC
GGCGTCAATG CGTTGCGCGG TCACTCCAAT ATTCAGGGGT ATACCGATCT GGGGCTGCTG
TCGCTGAACC TGCCGGGCTA CATGCCGTTG CCGTCGGAAA AACAGACCTC GTTGAAAGAA
TACCTGGATC AGATCACGCC GAAGGCGCTG CTGGCGGATC AGGTCAACTA CTGGAAGAAC
ACGCCGAAAT TTTTTATCAG CATGATGAAG AGTTTCTGGG GCGATAAGGC GACGAAGGAC
AACGACTGGG GCTACGACTG GCTGCCGAAG TGGGACAAAA GCTACGACGC GCTGGCCTAT
TCCCGCATGA TGCTGGATGG CAAGGTCAAT GGCTATATCG TGCAGGGCTT CAACCCGATG
GCGGCGTTTG CTGATTCCAA CAAAGCGCGC GATGCGTTGA AAAAACTGAA GTACATGGTC
GTCATCGACC CGTTGGCGAC CGAAACCTCC AACTTCTGGC AGAATCACGG TGAGTTGAAC
GATGTAGATT CAAGCCAGAT ACAGACGGAA GTGTTCCGTC TGCCTTCCAG TTGTTTTGCC
GAAGAAAACG GCTCCATCGT TAACTCTGGT CGCTGGCTGC AGTGGCATTA TCAGGGCGCG
GTACCGCCGG GTGAAGCGCG TAACGATGGG GTGATCATCG CCGGTTTGTT CTTGCGCCTG
CGCGAACTGT ACGCCAAAGA GGGCGGCGCC AATCCCGATC CGGTGCTGAA TATGTCCTGG
AATTACCTTA ATCCGGAAGA TCCGACGCCG GAGGAGATCA CGCAGGAAGC CAACGGCCGC
GCACTGGCGG ATTTGCTCGA TGACAAAGGT GTCCCTGTGC TGAAAAAAGG GCAACTGGTG
CCGGATTTCT CCGTACTGCG TGACGACGGC TCCACCGCCA GCTTCTGCTG GATTTACGCC
GGATCCTGGA CGGAAGCGGG CAACCAGATG GCGCGGCGTG ATAACTCTGA TCCATCAGGG
TTGGGTTGTA CGCCGGGATG GGCCTGGAGC TGGCCACAGA ATCGTCGCAT TCTCTACAAC
CGCGCGTCGG CAGATGAACA AGGCCGCCCG TGGGATCCCA AACGTGAGTT GATTCGCTGG
AACGGCCAGA AATGGACCGG GGTCGATGTG GCGGATTTTG CTGCGACCGT GCCGCCGGGC
AATGCGGCGG GGCCATTTAT TATGAATGCG GAAGGGTTGG GGCGGCTGTT CGCCATCGAC
AAAATGGCGG AAGGCCCGTT CCCGGCGCAC TATGAGCCGC TGGAGTCCCC GCTGAAGAAT
AATCCGGTCT ATAGCAAGGC GCTGGTCAAC CCGGCCGCCC GAATTTTGGA AGCGGATCGC
CCACGGATGG GAACGGTTGA TGAGTTTCCG TTCGTCGCTA CCACCTATTC CATCACCGAA
CTGTTCCGCC ACTGGACCAA ACATGCCCGG CTTAATGCCA TCGTACAGCC GGAACAGTTC
GTCGAAATCG GCGAGGGGTT GGCGAAGCAG AAAGGCATTC AGGCTGGCGA TATGGTGAAA
GTCAGCAGCA AACGCGGTTA TATCAAGGCT AAAGCGGTAG TCACCAAGCG TATCCGCACC
CTGACGATTC AAGGTAAACC GGTGGAAACC ATCGGCGTTC CTTGTCACTG GGGCTTTGAA
GGCACCACGC AGAAAGGCTT TATGGCTAAT ATCCTGACGC CGCATGTGGG TGATGCCAAT
AGCCAGACGC CGGAGTACAA GGCGTTTCTG GTGAATGTGG AAAAGGCGTA G
|
|---|
| Protein sequence | MQVSRRQFFK ICAGGMAGTT VTALGFSPSV ALAETRQYKL LRAKETRNNC TYCSVGCGIL
MYGLGDGAKN AKSSIYHIEG DPDHPVSRGA LCPKGAGLVD FIHSDQRLLY PEYRAPGADK
WQRISWEEAL DRIARLMKKD RDANFVEKNS AGVTVNRWLT TGMLCSSAAS NETGILDQKF
ARALGMIGID TQARLCHGPT VAALAPTFGR GAMTNNWVDI KNANVVLVMG GNPAEAHPVG
FKWAVEAKIH NGAKLIVVDP RFNRSASVAD LYSPIRAGSD ITFLLGVVNY LLTHDKIQMP
YVKAYTNASL IVRDDYSFDE GIFSGYSEKE HRYDRTSWQY ALDENGFAKR DLTLSDPRCV
WNLLKEHVSR YTPDLVTSVC GTPKQDFLTI CDLLGSTSVP DRTATIMYAL GWTQHTAGAQ
IIRTAAMIQL LLGNVGMAGG GVNALRGHSN IQGYTDLGLL SLNLPGYMPL PSEKQTSLKE
YLDQITPKAL LADQVNYWKN TPKFFISMMK SFWGDKATKD NDWGYDWLPK WDKSYDALAY
SRMMLDGKVN GYIVQGFNPM AAFADSNKAR DALKKLKYMV VIDPLATETS NFWQNHGELN
DVDSSQIQTE VFRLPSSCFA EENGSIVNSG RWLQWHYQGA VPPGEARNDG VIIAGLFLRL
RELYAKEGGA NPDPVLNMSW NYLNPEDPTP EEITQEANGR ALADLLDDKG VPVLKKGQLV
PDFSVLRDDG STASFCWIYA GSWTEAGNQM ARRDNSDPSG LGCTPGWAWS WPQNRRILYN
RASADEQGRP WDPKRELIRW NGQKWTGVDV ADFAATVPPG NAAGPFIMNA EGLGRLFAID
KMAEGPFPAH YEPLESPLKN NPVYSKALVN PAARILEADR PRMGTVDEFP FVATTYSITE
LFRHWTKHAR LNAIVQPEQF VEIGEGLAKQ KGIQAGDMVK VSSKRGYIKA KAVVTKRIRT
LTIQGKPVET IGVPCHWGFE GTTQKGFMAN ILTPHVGDAN SQTPEYKAFL VNVEKA
|
|---|
| |