| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dd703_2239 |
|---|
| Symbol | |
|---|
| ID | 8086626 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dickeya dadantii Ech703 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012880 |
|---|
| Strand | - |
|---|
| Start bp | 2633298 |
|---|
| End bp | 2634587 |
|---|
| Gene Length | 1290 bp |
|---|
| Protein Length | 429 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 57% |
|---|
| IMG OID | 644836316 |
|---|
| Product | 3-phosphoshikimate 1-carboxyvinyltransferase |
|---|
| Protein accession | YP_002987848 |
|---|
| Protein GI | 242239667 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0128] 5-enolpyruvylshikimate-3-phosphate synthase |
|---|
| TIGRFAM ID | [TIGR01356] 3-phosphoshikimate 1-carboxyvinyltransferase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 3 |
|---|
| Plasmid unclonability p-value | 0.00113969 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCAGGAAT CCCTGACCCT ACAGCCTGTC TCTCTGGTTA ATGGCACCAT CAACTTGCCG
GGCTCCAAAA GCGTTTCAAA CCGCGCGCTG CTGCTGGCGG CGCTCGCCGA AGGTACGACC
CGGCTTACCA ACCTGCTGGA CAGCGATGAT GTCCGTCATA TGCTCAATGC GCTGAAAGCG
TTGGGGGTCA GCTATACGCT TTCCGACGAT CGAACCGTGT GTGAAATTAC GGGCCTGGGA
CATGCCTTCG AGACGTCGGA ACGTCTGGAG CTGTTTCTGG GGAACGCGGG CACGGCGATG
CGTCCGCTGA CCGCTGCATT GTGCCTGACT GCCGGCGACA TCGTTTTGAC GGGCGAGCCG
CGTATGAAAG AGCGTCCCAT CGGTCATCTG GTGGACGCGC TGCGCCAGGG AGGCGCCGGC
ATTGATTATC TGGAACAGGA AAATTACCCG CCTCTGCGGT TACGGGGTGG GTTTGTCGGC
GGCGACATCA GTGTTGACGG CTCGGTTTCC AGTCAGTTTC TTACTGCGTT GCTGATGACT
GCGCCGCTTG CTCCGCAGGA TACCCGCATC ACCATCCAGG GCGATCTGGT GTCCAAACCC
TATATCGACA TTACGTTACA TATGATGAAA GCATTCGGTG TCGATGTGAC AAATGCGGAA
TATCGAACTT TCGCGATTGC CGGGAACCAG CATTACCGGG CGCCGGGAGA TTATCTGGTT
GAAGGCGATG CGTCTTCCGC TTCGTATTTC CTGGCTGCTG CGGCGATTCG CGGCGGTACG
GTGCGCGTGA CCGGTGTCGG GCGTAAGAGC GTGCAGGGCG ATGTCCGCTT TGCCGATGTG
CTCGAAAAAA TGGGCGCGCA GATTCGTTGG GGCGATGACT ATATTGAGTG CCAGCGTGGC
GAACTCCATG CCATTGATAT GGATATGAAC CATATTCCGG ACGCTGCGAT GACGATCGCC
ACGACGGCGC TGTTCGCGCA AGGCGGAACC ACGACGTTGC GTAATATCTA TAACTGGCGC
GTGAAAGAAA CCGATCGGCT GGCTGCGATG GCGATTGAAC TGCGTAAGGT CGGCGCTGAG
GTGGAAGAAG GGCATGATTA CATCTGCATT ACGCCGCCCA AACAGCTGCA AGCGGCTGAG
ATTGGTACTT ATAACGATCA CCGAATGGCC ATGTGTTTTT CATTGGTGGC GTTGTCCGAT
ACGCCTGTCA CGATCCTCGA TCCCAAGTGC ACCGCCAAAA CGTTTCCGGA TTACTTCCAA
CAACTGGAGC GTCTGAGTCG GCACGATTGA
|
|---|
| Protein sequence | MQESLTLQPV SLVNGTINLP GSKSVSNRAL LLAALAEGTT RLTNLLDSDD VRHMLNALKA
LGVSYTLSDD RTVCEITGLG HAFETSERLE LFLGNAGTAM RPLTAALCLT AGDIVLTGEP
RMKERPIGHL VDALRQGGAG IDYLEQENYP PLRLRGGFVG GDISVDGSVS SQFLTALLMT
APLAPQDTRI TIQGDLVSKP YIDITLHMMK AFGVDVTNAE YRTFAIAGNQ HYRAPGDYLV
EGDASSASYF LAAAAIRGGT VRVTGVGRKS VQGDVRFADV LEKMGAQIRW GDDYIECQRG
ELHAIDMDMN HIPDAAMTIA TTALFAQGGT TTLRNIYNWR VKETDRLAAM AIELRKVGAE
VEEGHDYICI TPPKQLQAAE IGTYNDHRMA MCFSLVALSD TPVTILDPKC TAKTFPDYFQ
QLERLSRHD
|
|---|
| |