| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dd703_1810 |
|---|
| Symbol | |
|---|
| ID | 8090406 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dickeya dadantii Ech703 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012880 |
|---|
| Strand | + |
|---|
| Start bp | 2156560 |
|---|
| End bp | 2158260 |
|---|
| Gene Length | 1701 bp |
|---|
| Protein Length | 566 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 644835894 |
|---|
| Product | ABC transporter related |
|---|
| Protein accession | YP_002987428 |
|---|
| Protein GI | 242239247 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG1123] ATPase components of various ABC-type transport systems, contain duplicated ATPase |
|---|
| TIGRFAM ID | [TIGR02323] phosphonate C-P lyase system protein PhnK |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.295405 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACGCCAC TGTTGGAGAT TCAGGATCTT CGGGTGACTT TCCCCGGCCA TCAGGCGGTG
CGCGGTCTCG ATCTGGCGCT TAATCCCGGT GAAACGCTGG CGCTGGTGGG CGAATCCGGC
TGCGGAAAAT CCGCCACCGC GTTGTCCATC ATGCGGCTGG TGGGCGCGCC GGGGCAGGTC
GCCGGACGCA TGCTGTTCGA TGGGCAGGAT CTGTTGGCGC TGCCGGATTC TGCGGTGCGT
CAGCTGCGCG GCAACGTGAT TTCAATGATT TTTCAGGAGC CGATGACCTC GCTCAACCCG
GTGTTGACCA TCGGCCAGCA GATCGTCGAA ACCTTGCGCA CGCACCAGCC GCTGACGCCG
GCTCAGGCGC GGACGCGCGC CATCGAGCTG CTGGATGTGG TGAAGATCCC TGAACCCAGG
CGGCGTATCG ACGACTACCC GCACCAGCTG TCCGGCGGGC AGCGTCAGCG GGTGATGATT
GCCATGGCGG TGGCCTGCCA ACCGAAGCTG CTGATTGCCG ATGAGCCGAC CACCGCGCTG
GACGTCACCA TTCAGGCGCA GATTCTGGCG TTGCTGGATC ACCTGCGGCG TGAGTTGTCG
ATGGGCCTGC TGCTGATCAC GCACGATCTG GGGGTGGTGG AGCAGTGGGC GGATCGCGTC
GCGGTGATGG TCGGTGGGCG CAAGGTGGAG GAAGCGGCGA CCGACGCGCT GTTTCGGGCG
CCGCAGCACC CCTATACCCG CGGGCTGCTG GCGACGTCGC TGCATCTGGC CGATGACCTG
CACTATCGGC GGCAACGCCT GCCGGAAATC CGCCATCCTG ATAACGGCGA CGCCGGGCAG
GTGACGCTGG TGACGCCGCC ACTGCGCAGC GTACCGGCCC CAGACACCGC GCGGTCGCCG
CTGCTGTCGT TGCATCGGGT GCATACCCGC TACGCCACGC CGCAAGGCGT GGTCAATGCG
GTGCAGGATA TCTCGCTCGA CATTTATCCC GGCGAAACGC TGGGGCTGGT GGGGGAATCC
GGCTGCGGCA AATCGACGCT GTCGAAAACG ATTTTGCGCC TGCTGCCGGT TGCTGAGGGC
CGGATGCTGT TTGACGGTCA GGATATTACC CATCTGAGCG AGTCGCAGTT GCAGCCGCTG
CGCCGCCGGG TGCAGATGAT TTTTCAGGAT CCCTATGCCT CGCTCAATCC GCGTCACGAT
GTCCAGCGCA TTCTGGAGCG GCCGCTGATT GTGCATGGCG TAACCCGACG GGCGGAGCGT
CAGCGCTTGA TCGGCCAGGC GCTGGAGCGC GTCCGGCTGC CGCAGAGTAG CCTTCAGCGC
TATCCGCACG AGTTTTCCGG CGGCCAGCGT CAGCGCATCG GCATTGCGCG CGCGCTGGTG
GTCAACCCGT CGCTGGTGAT TTGCGACGAG CCGGTATCGG CGTTGGATGT GTCGATTCAG
GCGCAAATTC TTAATTTGCT GGTGGAGCTG AAGAGCGAAA TGGGCCTGTC GCTGCTGTTC
ATTTCGCACG ACTTGTCCGT GGTGCGCTAC ATCGCCGACC GGGTGATGGT GATGCAGCAC
GGTGAGTGTG TGGAAAGCGG CGATGGCCAG CAAATCTGGC GCCAGCCGCA GCACCCCTAT
ACTCGTCTGC TGCTGGACTC CGTGCCGGGG CGGCAGCCGA CGCAATCGGA TGCCGGCCGT
TTTTCCGTGG TTAACGCATA A
|
|---|
| Protein sequence | MTPLLEIQDL RVTFPGHQAV RGLDLALNPG ETLALVGESG CGKSATALSI MRLVGAPGQV
AGRMLFDGQD LLALPDSAVR QLRGNVISMI FQEPMTSLNP VLTIGQQIVE TLRTHQPLTP
AQARTRAIEL LDVVKIPEPR RRIDDYPHQL SGGQRQRVMI AMAVACQPKL LIADEPTTAL
DVTIQAQILA LLDHLRRELS MGLLLITHDL GVVEQWADRV AVMVGGRKVE EAATDALFRA
PQHPYTRGLL ATSLHLADDL HYRRQRLPEI RHPDNGDAGQ VTLVTPPLRS VPAPDTARSP
LLSLHRVHTR YATPQGVVNA VQDISLDIYP GETLGLVGES GCGKSTLSKT ILRLLPVAEG
RMLFDGQDIT HLSESQLQPL RRRVQMIFQD PYASLNPRHD VQRILERPLI VHGVTRRAER
QRLIGQALER VRLPQSSLQR YPHEFSGGQR QRIGIARALV VNPSLVICDE PVSALDVSIQ
AQILNLLVEL KSEMGLSLLF ISHDLSVVRY IADRVMVMQH GECVESGDGQ QIWRQPQHPY
TRLLLDSVPG RQPTQSDAGR FSVVNA
|
|---|
| |