| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dd703_1729 |
|---|
| Symbol | |
|---|
| ID | 8090325 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dickeya dadantii Ech703 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012880 |
|---|
| Strand | + |
|---|
| Start bp | 2055760 |
|---|
| End bp | 2057328 |
|---|
| Gene Length | 1569 bp |
|---|
| Protein Length | 522 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 57% |
|---|
| IMG OID | 644835814 |
|---|
| Product | DNA-binding transcriptional regulator TyrR |
|---|
| Protein accession | YP_002987348 |
|---|
| Protein GI | 242239167 |
|---|
| COG category | [E] Amino acid transport and metabolism
[K] Transcription |
|---|
| COG ID | [COG3283] Transcriptional regulator of aromatic amino acids metabolism |
|---|
| TIGRFAM ID | [TIGR00229] PAS domain S-box |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.52273 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCGTCTGG AAGTGTTTTG TCAGGACCGG CTCGGTCTGA CTCGTGAATT GCTGGATCTA
CTGGTACTGC GCCATATTGA TTTGCGTGGT ATCGAGATCG ATCCTGTCGG CCGAATCTAC
CTGAATTTCG CGACGCTGCA TTTTGAGGAG TTCAGCGCGC TGATGGCGGA AATTCGCCGC
ATTCCGGGCG TTAGCGATGT CCGCACCATC GCCTTTATGC CGTCGGAGCG TGAGCATCGG
GCGCTCAGTG CATTGCTGGA GTCGATGCCC GAGCCGGTGT TATCGGTGGA TCTGAAAGGC
AAGCTGGAAC TGGTCAACGC CGCCGCGCTG ACATTGTTCG AGTTGACACG GGATAAAGCC
CGGGCCATGA CGTTGGGGCA ACTGGTGAAT GGCTACGCAA TCGCCCAGTG GCAGGAACTG
GGCGGCAGGC CGGAAACCGT GCGGGTAGTG ATTCGCGGCC AGGATTTTTT GCTGGAGGTG
ACGCCAGTAC ACCTGGAAGA CGACAACGGT AAACTGACGA CGGCCGGCGC GCTGGTGATG
TTGCGATCAG CGGTACGCAT GGGGAGACAA CTGCAGGATA CGCCGGTTCA TGACGACCGG
GAGTTCGAGC ATGTGGTGGC GGTAAGCCCG CGTATGCGCC AGGTGGTGGA ACAGGCACGC
AAACTGGCGA TGTTGGATGC GCCGTTGCTG CTGATTGGCG AAACCGGCAC GGGCAAGGAT
ATGCTGGCTC GAGCCTGCCA TCTACGTAGC AGCCGGGGTA AGAAACCCTT TTTGGCGCTC
AACTGTGCCT CGCTGCCGGA TGATGTGATG GAAAGCGAAC TTTACGGCTA TGCGCCAGGC
GCTTACCCCA ATGCGCTGGA AGGTAAGAAA GGGTTTTTCG AACAGGCTAA CGGTGGTTCG
GTGCTGCTGG ACGAAGTGGG CGAGATGTCG CCCCAGATGC AGACTAAATT GCTGCGATTT
CTCAACGACG GCACGTTCCG GCGTGTGGGG GAAGAGCATG AGGTTCACGT TGATGTTCGT
GTGATCTGCG CTACCCAGAA AAATCTGCAG GATTTGGTGC AACGCGGGCT GTTTCGTGAG
GATTTGTTCT ATCGTCTGAA TGTGTTGACG ATCAATTTGC CGCCCTTGCG CGAGTGTCCG
ATGGACGTCA TGCCGTTGGT GGAATTGTTT GTCGCCCGTT TCGCCGATGA GCAGGGCATT
GCGCATCCCC GTATCGCGCC GGAGGTGCGC GCTTTGTTGC CGCAGTATGG TTGGCCGGGC
AATGTGCGCC AGTTAAAAAA TACTCTCTAT CGTGCATTGG CTCAGTTGGA AGGCCATGAA
CTGCGTCTGG CGGATATCGA CCTGCCTGCA TTCCAGCATG ACGTCGCCCA CAGCGACGAG
GTGCTGGAAG GGTCGCTGGA TGATATCAAT AAACGATTTG AGCGTTCGGT GTTGACCCGG
CTGTATCAAA CTTACCCCAG CACCCGCAAA CTGGCGAAAA GGCTGGGGGT TTCTCATACC
GCTATCGCCA ATAAATTGCG TGAATACGGT CTCAGCGGGC GTAAAAGCGT CGGCGATGAA
GATGAGTGA
|
|---|
| Protein sequence | MRLEVFCQDR LGLTRELLDL LVLRHIDLRG IEIDPVGRIY LNFATLHFEE FSALMAEIRR
IPGVSDVRTI AFMPSEREHR ALSALLESMP EPVLSVDLKG KLELVNAAAL TLFELTRDKA
RAMTLGQLVN GYAIAQWQEL GGRPETVRVV IRGQDFLLEV TPVHLEDDNG KLTTAGALVM
LRSAVRMGRQ LQDTPVHDDR EFEHVVAVSP RMRQVVEQAR KLAMLDAPLL LIGETGTGKD
MLARACHLRS SRGKKPFLAL NCASLPDDVM ESELYGYAPG AYPNALEGKK GFFEQANGGS
VLLDEVGEMS PQMQTKLLRF LNDGTFRRVG EEHEVHVDVR VICATQKNLQ DLVQRGLFRE
DLFYRLNVLT INLPPLRECP MDVMPLVELF VARFADEQGI AHPRIAPEVR ALLPQYGWPG
NVRQLKNTLY RALAQLEGHE LRLADIDLPA FQHDVAHSDE VLEGSLDDIN KRFERSVLTR
LYQTYPSTRK LAKRLGVSHT AIANKLREYG LSGRKSVGDE DE
|
|---|
| |