| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dd703_1385 |
|---|
| Symbol | |
|---|
| ID | 8087947 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dickeya dadantii Ech703 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012880 |
|---|
| Strand | + |
|---|
| Start bp | 1588259 |
|---|
| End bp | 1589128 |
|---|
| Gene Length | 870 bp |
|---|
| Protein Length | 289 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 52% |
|---|
| IMG OID | 644835466 |
|---|
| Product | quinate/shikimate dehydrogenase |
|---|
| Protein accession | YP_002987009 |
|---|
| Protein GI | 242238828 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0169] Shikimate 5-dehydrogenase |
|---|
| TIGRFAM ID | [TIGR00507] shikimate 5-dehydrogenase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.859901 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGATGTCA CTGCAAAATA TGAACTGATC GGCTTGATGG CTTACCCCAT CAGACACAGT
CTTTCGCCTG AAATGCAGAA TAAAGCGCTC GATAAAGAAG GTCTGCCTTA TACCTATATG
GCGTTTGAAG TGGATAACGA ATCCTTCCCG ATGGCTATCG AAGGTCTTAA GGCGCTGAAG
ATGCGTGGTA CGGGTGTTTC TATGCCCAAT AAGCAACTGG CCTGCGAATA TGTCGACGAG
TTGACCCCGG CGGCCAGACT GGTGGGCGCC ATTAATACCA TTGTGAACGA CAACGGTTAT
CTCAAGGGGT ATAACACCGA CGGTACCGGC CATATCCGCG CCATCAAGGA AAGCGGCTTT
GATATTAAAG GCAAAACCAT GGTGCTGGTG GGCGCCGGCG GCGCTTCCAC CGCAATCGGC
GCTCAGGCGG CGATCGAAGG CATCAAGGCC ATTAAGTTGT TCAACCGCAA GGATGAGTTC
TACGAAAAAG CGCTCGATTT CGCCAAACGG GTGAATGAAA ACACCGACTG TACTGTGACC
GTTCACGACC TGGGCGACCA ACAAGCGTTT GCCGATGCCA TCGCCACCGC CGACATCCTG
ACCAACGGAA CCAAACTGGG GATGAAGCCG CTGGAAAATG AAAGCCCGGT CACAGACAAA
ACCATGCTGC GCCCGGAATT GCTGGTGACG GAATGCGTGT ATAACCCGCA TATCACGAAA
TTGCTGCAGA TGGCGCAGGA CGTTGGCTGT AAGACTGTCG ATGGTTACGG TATGTTGCTG
TGGCAGGGAG CTGAACAGTT CAAACTCTGG ACCGGTAAAG ACTTCCCGCT GGAATATATT
AAAGAGGCCA TGGGGTTCAC GGGGAAATAA
|
|---|
| Protein sequence | MDVTAKYELI GLMAYPIRHS LSPEMQNKAL DKEGLPYTYM AFEVDNESFP MAIEGLKALK
MRGTGVSMPN KQLACEYVDE LTPAARLVGA INTIVNDNGY LKGYNTDGTG HIRAIKESGF
DIKGKTMVLV GAGGASTAIG AQAAIEGIKA IKLFNRKDEF YEKALDFAKR VNENTDCTVT
VHDLGDQQAF ADAIATADIL TNGTKLGMKP LENESPVTDK TMLRPELLVT ECVYNPHITK
LLQMAQDVGC KTVDGYGMLL WQGAEQFKLW TGKDFPLEYI KEAMGFTGK
|
|---|
| |