| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dd703_0898 |
|---|
| Symbol | |
|---|
| ID | 8090039 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dickeya dadantii Ech703 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012880 |
|---|
| Strand | - |
|---|
| Start bp | 1028676 |
|---|
| End bp | 1030157 |
|---|
| Gene Length | 1482 bp |
|---|
| Protein Length | 493 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 644834972 |
|---|
| Product | permease for cytosine/purines uracil thiamine allantoin |
|---|
| Protein accession | YP_002986528 |
|---|
| Protein GI | 242238347 |
|---|
| COG category | [F] Nucleotide transport and metabolism
[H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG1953] Cytosine/uracil/thiamine/allantoin permeases |
|---|
| TIGRFAM ID | [TIGR00800] NCS1 nucleoside transporter family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCCAGAAA CGACAATCAC AACCGGGAAT AGCCCGGCGC ATTACAGCCC CAGACTGTGT
AATGAGGATC TGGCGCCAAC GCGGGAACAG AACTGGTCTT GGTACAACAT ATTCTCGTTC
TGGATGTCGG ATGTGCACAG TATGGGCGGC TATGTGGTCG CCGCCAGTTT CTTCACGCTG
GGGTTGGCCA GCTGGCAGGT GCTGCTATGC CTGCTGGCGG GCATCTGCAT CGTGCAACTG
TGCGCCAATC TGGTCGCCAA ACCCAGCCAG ATGAGCGGCG TACCCTATGC GGTGATCAGC
CGTCAGGCCT TCGGCGTGTT CGGCGCCAAT ATTCCGGCGG TGATTCGCGG GTTGATCGCC
TTCGCCTGGT ACGGCATCCA GACTTATCTG GCCGCCAACG CGCTGATGCT GGTGGCGCTG
AAGTTCTATC CCGCACTGAC GCCGCTGACG CAGCCGCACT GGCTCGGGCT GTCCGCGCTG
GGCTGGATCT GCTTCGGTAT TATGTGGCTG TTGCAGGCGA TGGTATTCTG GCACGGCATG
AGCGCCATCA AGCGTTTTAT CGATGTCGCC GGCCCGGCGG TTTATGTCGT CATGTTGGCA
TTGGCGGCAT GGATTGTATA CAAAACAGGG CTAAGCAGTA TTTCATTCAC GCTGGGCAGC
AAGTCGCTCA GCGGCGGCGA ACAGCTCTGG CAGATGATCA CCGCCACCGC GCTGGTCGTT
TCCTATTTCT CCGGGCCGTT GCTGAACTTC GGCGACTTTT CCCGCTACGC CAAAAACATG
GGAGAAATTC GTCGCGGCAA CCGCTGGGGG CTGCCGTTCA ACTTTCTGCT GTTCTCCATC
GTCACCGTGG TGATCGTCTC CGGCACCCAG TCGCTGTTCG GGCAGATGAT GACCGATCCG
ATCGAGACCG TCAGCCGTGT CGGCAGTAGC GTGGCGGTGG CACTGGGCTT GCTGACCATG
ATCATCGCCA CCATCGGCAT CAACATCGTC GCTAACTTTG TTTCGCCGGC GTTCGATTTC
TCCAACTGCG CGCCGCAGCG TATCAGCTTT CGCACCGGCG GCATGATTGC CGCGGTAGGC
TCGGTACTGC TGACGCCGTG GAACCTGTTC CAGTCCCCGG AGCTGATCCA CTACACGCTG
GATGTGCTGG GCGCCTTTAT CGGCCCGTTG TTCGGCATCC TGCTGGCCGA TTTCTATCTC
ATCAAAGGCA GCAAGGTTGA CGTGGATGCG CTGTTCAACG ATGCGCCGGG CGGCCGCTAC
TGGTATCGCA ACGGCGTCAA TCCCAACGCA GTGCTGGCAT TGCTCCCGTC GGTGGCGATC
GGCCTGGTGA TCAGCTTCAT TCCCGCCTGG CATGACGTCG CCAATTTCAG CTGGTTTATC
GGCGTGGCGT TGGGGGCGGG TTGTTACCGT TATCTGGCTC GCCACGAACG GGCGCAGTCG
CCCGCGGCGT TTATGTCCGG ACTGGCGCTG GGTAAAGAGT AA
|
|---|
| Protein sequence | MPETTITTGN SPAHYSPRLC NEDLAPTREQ NWSWYNIFSF WMSDVHSMGG YVVAASFFTL
GLASWQVLLC LLAGICIVQL CANLVAKPSQ MSGVPYAVIS RQAFGVFGAN IPAVIRGLIA
FAWYGIQTYL AANALMLVAL KFYPALTPLT QPHWLGLSAL GWICFGIMWL LQAMVFWHGM
SAIKRFIDVA GPAVYVVMLA LAAWIVYKTG LSSISFTLGS KSLSGGEQLW QMITATALVV
SYFSGPLLNF GDFSRYAKNM GEIRRGNRWG LPFNFLLFSI VTVVIVSGTQ SLFGQMMTDP
IETVSRVGSS VAVALGLLTM IIATIGINIV ANFVSPAFDF SNCAPQRISF RTGGMIAAVG
SVLLTPWNLF QSPELIHYTL DVLGAFIGPL FGILLADFYL IKGSKVDVDA LFNDAPGGRY
WYRNGVNPNA VLALLPSVAI GLVISFIPAW HDVANFSWFI GVALGAGCYR YLARHERAQS
PAAFMSGLAL GKE
|
|---|
| |