Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Dd703_0848 |
Symbol | rumA |
ID | 8089984 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Dickeya dadantii Ech703 |
Kingdom | Bacteria |
Replicon accession | NC_012880 |
Strand | + |
Start bp | 966791 |
End bp | 968119 |
Gene Length | 1329 bp |
Protein Length | 442 aa |
Translation table | 11 |
GC content | 61% |
IMG OID | 644834919 |
Product | 23S rRNA 5-methyluridine methyltransferase |
Protein accession | YP_002986480 |
Protein GI | 242238299 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG2265] SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase |
TIGRFAM ID | [TIGR00479] 23S rRNA (uracil-5-)-methyltransferase RumA |
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Plasmid Coverage information |
Num covering plasmid clones | 2 |
Plasmid unclonability p-value | 0.000210259 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGCGCAAT TCTACTCTCC AAACCGGCGC GTGACGACCC GGCAAATCCT CACCGTGACG GTGGACTCAC TCGATTCGTT CGGGCAGGGC GTCGCCCGCC ATGAGGGCAA GACCCTGTTT ATTCCCGGAG TGCTGCCGGG GGAACAAGCC GAAGTCCAAC TGACGACAGA AAAGCGCCAG TTTGCCCATG CCCGGTTGCG CCGCCGGTTG AACAGCAGCG CTGAGCGGGT TGAACCGCGG TGTCCGCATT TTTCCGTCTG CGGCGGTTGC CAGCAGCAGC ATGCCGGCAT GGCGTTGCAG CAGCGCAGCA AAGCGGCGGC GTTGCGCCAT CTGATGCGGC GGGAAACCGG CGTGGAGATG CCGGAACCGG TGGTGATCGA CGGCCCTGAT TATGGCTATC GCCGTCGGGC TCGGCTGGCA TTGCTGTATC AACCGAAAAC TCGTCAATTG CTGATGGGGT ACCGCCGGGA AGGGTCGCAC GATCTGGCGG ATATTCATGT TTGTCCTGTT CTGCATCCGG CGCTGGAGGC GTTGCTGACT CCGCTGCGCG ATTGTCTGGC CGGTTTGAAG GCGGCCAAAC GGCTTGGGCA TGTGGAACTG GTGATGGCGG AGCAGGGGCC GTTGGTGGTG CTGCGTCATC TGGATGTATT GCAGGAGGCC GATCGGCAGG CGCTGAACGA TTTTGGCGCT CGCGTTGGCT GCGCGTTGTT TCTGGCGCCG GAGGCGGGTG CGCTGGCGTG TCTGCGTGGC GCAGCGCCTT CGTACCGGAT CGATGGGTTA TCGCTGGCAT TCAGCCCGCG CGATTTTATT CAGGTCAACG ACGAGGTTAA TCAGCGCATG GTGGCGCAAG CGCTGGAATG GCTTGACCCG CAGCCGCATG AGCGGGTGCT CGATCTGTTT TGCGGCATGG GAAACTTTAC GCTGCCGCTG GCGCGCCGGG CAGCCAGCGT GGTCGGCGTG GAAGGTGTGG CCGCTCTGGT GGAGAAAGGG CGTGAAAACG CCGAGCGCAA TGCGTTCGGT AATGTCACAT TCTTTCACCA GAACCTGGAA GAAGACGTGA CACGGCAGCC GTGGGCCGCC CAGGGTTTTG ATAAGATATT GCTCGATCCG GCGCGAGCCG GTGCGCCCGG TGTGATGTCA CAGATTGTGA AGTTGACCCC CGGCCGCGTG GTTTATATAT CCTGTAATCC GACTACGCTG GCGCGTGACA GCCGGGTACT GCTGGCGGCA GGGTACCGGT TGGAGAAGCT GGCGATGCTG GACATGTTTC CACATACCGG ACATCTTGAG TCGATGGCAC TGTTTTTGCT TGACTCCAAC GTGCGGTAA
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Protein sequence | MAQFYSPNRR VTTRQILTVT VDSLDSFGQG VARHEGKTLF IPGVLPGEQA EVQLTTEKRQ FAHARLRRRL NSSAERVEPR CPHFSVCGGC QQQHAGMALQ QRSKAAALRH LMRRETGVEM PEPVVIDGPD YGYRRRARLA LLYQPKTRQL LMGYRREGSH DLADIHVCPV LHPALEALLT PLRDCLAGLK AAKRLGHVEL VMAEQGPLVV LRHLDVLQEA DRQALNDFGA RVGCALFLAP EAGALACLRG AAPSYRIDGL SLAFSPRDFI QVNDEVNQRM VAQALEWLDP QPHERVLDLF CGMGNFTLPL ARRAASVVGV EGVAALVEKG RENAERNAFG NVTFFHQNLE EDVTRQPWAA QGFDKILLDP ARAGAPGVMS QIVKLTPGRV VYISCNPTTL ARDSRVLLAA GYRLEKLAML DMFPHTGHLE SMALFLLDSN VR
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