Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Dd703_0835 |
Symbol | ligA |
ID | 8089971 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Dickeya dadantii Ech703 |
Kingdom | Bacteria |
Replicon accession | NC_012880 |
Strand | + |
Start bp | 948566 |
End bp | 950620 |
Gene Length | 2055 bp |
Protein Length | 684 aa |
Translation table | 11 |
GC content | 60% |
IMG OID | 644834906 |
Product | NAD-dependent DNA ligase LigA |
Protein accession | YP_002986467 |
Protein GI | 242238286 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG0272] NAD-dependent DNA ligase (contains BRCT domain type II) |
TIGRFAM ID | [TIGR00575] DNA ligase, NAD-dependent |
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Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGTCAGAAA AAAAGCCGAT GCCAATGAAT GATACCTCCG CCGCCGCAGT GCAGATTGAT GCGCTGCGCG CCCAACTGCG TTATCACGAA TACAAGTATC ACGTCGAAGA TGCCCCGGAA ATTCCCGATG CGGAATACGA CAAGCTGATG AACGCGCTGA AACTGCTGGA GCAGGCGCAT CCCGAGTGGG TGACGTCGGA TTCGCCGACC CAGCGGGTGG GAGCGACGCC GTTGGCGGGG TTCGATAACG TTCAACATGA AGTCCCGATG TTGTCGCTGG ACAATGTATT TGACGCAGAG AGTTTTCAGG CTTTCGTGAA ACGTATCGGC GATCGGCTGA AAAGCGACGA AGCCTTGAGG TTTTGTTGCG AGCTGAAGCT GGACGGCCTG GCGGTCAGTC TGTTGTACGA GGACGGCGTG CTGGTGCGCG CGGCGACGCG CGGCGACGGC TCCACCGGTG AAAATATCAC TTCCAATATC CGTACCATCG GTGCGATACC GCTGCGGTTG CGGGGTGACA ACATTCCGCG TCGCCTGGAA GTGCGCGGTG AAGTGTTTAT GAAGCATAAA GGCTTCGAAG CGCTCAATGA GGAAGCGCGC CGTACCGGCG GCAAGGTGTT TGCCAATCCG CGTAATGCGG CGGCAGGCTC GTTGCGTCAG CTCGATCCGC GTATTACCGC TAAACGTCCC TTGACTTTTT TCTGCTACGG CGTGGGGTTG ATGGAGGGCG GTTCATTGCC CGACAGCCAC TGGCAGCGAC TGATGCAGTT TCGCGAGTGG GGGTTGCCGG TCAGTGATCG TATCCGATTG TGTACCGGCG GCGATGAGGT GCTGGCGTTT TACCAGCATG TGGAAGCGGT ACGCGATACG CTGGGATTTG ATATCGATGG CGTGGTGATC AAGGTCGATG ATTTGGCGTT GCAGGAGCGG CTGGGGTTTG TGGCGCGGGC GCCGCGTTGG GCGGTGGCGT TCAAATTCCC GGCGCAGGAA CAGCTGACCT GGCTGCGCGA TGTGGAGTTT CAGGTAGGGC GCACCGGCGC CATCACGCCG GTCGCCAGAT TGGAGCCGGT GGCGGTGGCG GGCGTTATCG TCAGCAACGC CACGTTGCAC AATGCGGATG AGATCGACCG GTTGGGGATC CAGATTGGCG ATCGCGTTGC CGTTCGACGT GCTGGTGATG TGATCCCGCA GATTGTCAGC GTGGTATTGC CGGATCGCCC GGCGGATGCC CGCCCGGTGG TGTTTCCGAC GCAGTGCCCG GTGTGCGGTT CCGATGTTGA GCGGGTGGAC GGTGAAGTGG TGACTCGTTG CACTGGCGGC TTGTTCTGCG CTGCACAACG TAAAGAGGCG CTCAAGCACT TCGTTTCCCG CCGTGCGCTG GATGTGGAAG GGATGGGCGA TAAAATTATC GACCAGCTGG TCGAAAAAGA ATACGTCAAG ACGCCGGCGG AGCTGTTTCG TCTGGACATC GGCATTCTTA CCCGCCTGGA ACGTATGGGG CCGAAGTCGG CGCAGAATCT GGTGAATGCG CTGGATAAAG CCAAATCCAC CACGTTTGCC CGTTTCCTGT ATGCGTTGGG CATTCGGGAT GTCGGCGAAG CGACGGCCGC TGGCCTGGCC GCGCACTTCG GAACGCTGGA CGCGCTGATG ACCGCCGATG TGGACACGCT GCAGCAGGTA CCGGATGTCG GCATCGTGGT GGCGACGCAT GTGCGGCATT TTCTGGATGA GGAGCATAAC CAGCAGATAA TTCGTGAACT GATCGGCCCG GAGGTTGGCC TGCGCTGGCC AGATCCGGTG GTGGTCGACG CCGGGGCGCT GGATAACCCG TTCGCGGGTA AAACCGTGGT GCTGACGGGC TCGCTCAGCC TGTTGTCCCG CGATGAGGCG AAAGATCGCC TGACTGCGCT GGGGGCGAAG GTCAGCGGCA GTGTGTCGAA GAAGACCGAT CTGGTGATCG CGGGCGAGGC GGCGGGCTCC AAACTGGCGA AAGCGCAGGC GCTGGGGATC GACGTGATTG ATGAAGTGGA AATGATGCGG CTGCTGGGGC AGTAA
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Protein sequence | MSEKKPMPMN DTSAAAVQID ALRAQLRYHE YKYHVEDAPE IPDAEYDKLM NALKLLEQAH PEWVTSDSPT QRVGATPLAG FDNVQHEVPM LSLDNVFDAE SFQAFVKRIG DRLKSDEALR FCCELKLDGL AVSLLYEDGV LVRAATRGDG STGENITSNI RTIGAIPLRL RGDNIPRRLE VRGEVFMKHK GFEALNEEAR RTGGKVFANP RNAAAGSLRQ LDPRITAKRP LTFFCYGVGL MEGGSLPDSH WQRLMQFREW GLPVSDRIRL CTGGDEVLAF YQHVEAVRDT LGFDIDGVVI KVDDLALQER LGFVARAPRW AVAFKFPAQE QLTWLRDVEF QVGRTGAITP VARLEPVAVA GVIVSNATLH NADEIDRLGI QIGDRVAVRR AGDVIPQIVS VVLPDRPADA RPVVFPTQCP VCGSDVERVD GEVVTRCTGG LFCAAQRKEA LKHFVSRRAL DVEGMGDKII DQLVEKEYVK TPAELFRLDI GILTRLERMG PKSAQNLVNA LDKAKSTTFA RFLYALGIRD VGEATAAGLA AHFGTLDALM TADVDTLQQV PDVGIVVATH VRHFLDEEHN QQIIRELIGP EVGLRWPDPV VVDAGALDNP FAGKTVVLTG SLSLLSRDEA KDRLTALGAK VSGSVSKKTD LVIAGEAAGS KLAKAQALGI DVIDEVEMMR LLGQ
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